Paraburkholderia edwinii: KZJ38_20560
Help
Entry
KZJ38_20560 CDS
T07588
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZJ38_20560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pew03019
]
KZJ38_20560
Enzymes [BR:
pew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KZJ38_20560
Messenger RNA biogenesis [BR:
pew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZJ38_20560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYD68595
LinkDB
All DBs
Position
1:4624882..4626567
Genome browser
AA seq
561 aa
AA seq
DB search
MSFDSLGLSEPLVRAVQELGYTSPTPIQLQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLSTGAAAAAHSAAAASAKRVVRALILTPTRELAAQVEESVRAYSKYVKVKSTVMFGGV
GINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSRLEILVLDEADRMLDMGFIHDIKRV
LAKLPAKRQNLLFSATFSDEIKALADSLLNSPALIEVARRNTTAETVAQKVHPVDRDRKR
EMLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKD
ATLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE
LQLLKDIEKLIKRAVPQEVIAGFEPDPNARPEPIQRRGQGGGGGGARPPREPREAGAGRG
SATRAQKPSQKRDGAGAAQQRAGSTGSRPAGGQQQAQQRNQQAEPRKQQHQAGSKPHPQQ
PAKPQGARAAHAAPAQARKDGPRHDATRTHEKPRASAHEHGAAHAQRKQGGNPGALLGGN
KPRSDAAPKRRNPSRDTRRGD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcttgtccgaaccgttggtccgcgctgttcaagaactcggc
tacacgtctcctactccgatccagttacaagcgattcccgccgtgctgaacggcggcgac
ctgcttgccggtgcgcagacgggcactggcaagaccgccggcttcacgctgccgatcctg
caacggctttccacgggcgcggcggccgcggcacattcggcggctgcggcgagtgcgaag
cgcgtggtgcgcgcgctgatcctcacgcccacgcgcgaactcgctgcgcaggtcgaggaa
agcgtgcgcgcgtatagcaaatacgtgaaggtgaagtcgaccgtgatgttcggcggcgtc
ggcatcaatccgcagatcgacgcgctcaagcgcggtgtcgatatcgtggtcgcgacgccg
gggcgcctgctcgatcacatgcagcagaagacgatcgacctctcgcgcctcgagattctc
gtgctcgacgaagccgatcgcatgctcgacatgggcttcattcacgacatcaagcgtgtg
ctcgcgaagctgccggcgaagcgccagaacctgttgttctccgcgaccttctccgacgag
atcaaggcgctggccgacagcctgctcaactcgccggcgctgatcgaagtggcgcgccgc
aatacgacggccgagacggtcgcgcaaaaggtgcacccggtcgaccgcgaccgcaagcgc
gagatgctcacgcatctgatcaagcagcacaactggtttcaggtgctcgtcttcacgcgc
acgaagcacggtgcgaaccggctcgcggagcagctgacgaaggacggcatcagcgcgctc
gcgattcacggcaacaagagccagtcggcgcgcacgcgcgcgttgagcgaattcaaggac
gctaccctgcaggtgctcgtcgcgaccgatatcgccgcgcgcggtatcgatatcgaccag
ctgccgcacgtggtcaacttcgatctgcccaacgtccccgaagactacgtgcaccggatc
ggccgtacgggccgcgcgggcgcgacgggcgaagcggtgtcgctcgtgtgcgtcgatgaa
ttgcagctgctgaaggacatcgagaagctgatcaagcgtgcggtgccgcaggaagtgatc
gcgggtttcgagcccgacccgaatgcgcggcccgagccgatccagcggcgtggccagggt
ggcggcggcggcggtgcgcggccgccgcgtgagccgcgtgaggcaggtgccggacgcggt
tcggcgacaagggcgcagaagccctcgcaaaagcgtgacggtgcgggcgctgcgcagcag
cgcgcgggtagtacgggtagtaggccggctggtgggcagcaacaggcgcagcaaaggaat
cagcaagcggagccgcgcaagcagcagcatcaggcgggcagcaagccgcatccgcagcag
ccggccaaaccgcaaggtgcaagagcggcgcacgcggcaccggctcaagctcgcaaggat
ggcccgcgccacgacgcgacacgcacacatgaaaagccgcgcgcgagcgcgcacgaacac
ggtgccgcgcatgcgcagcgcaagcagggcggcaacccgggtgcgctgcttggcggcaac
aagccgcgtagcgatgcagcgccgaagcggcgcaacccgtcgcgcgatacgcggcgcggc
gactga
DBGET
integrated database retrieval system
