Paraburkholderia edwinii: KZJ38_35870
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Entry
KZJ38_35870 CDS
T07588
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pew
Paraburkholderia edwinii
Pathway
pew02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KZJ38_35870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pew03021
]
KZJ38_35870 (rpoD)
Transcription machinery [BR:
pew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KZJ38_35870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7853
KIND
Motif
Other DBs
NCBI-ProteinID:
QYD72308
UniProt:
A0ABX8UZN9
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All DBs
Position
2:complement(3256253..3258655)
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AA seq
800 aa
AA seq
DB search
MVKTTGGKKAAGKGSEQPTTKVTEARSATSATKTSTQSATPARKRTSTVSAARAAPVQAA
KAVASVKEPPGAGSPKEDARDAAAAQDDAAVRESPVSTVQPAVVHQPRVETTAGTANSMT
KKLNEVSVDDDATTQSEEPATTPAPGKGEKAKARDRRAKEKALLKDAFASTQPGTAEELE
ERRSKLRALIKLGKERGFLTYAEINDHLPDNFAETEAIEGIISTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDENAADADGFSEQ
EAEAIENEDEEAEEDEEEEEEDDDGAAQATANAAQLEALKRMSLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDK
CGMPRAEFIARFPGNETDLEWSDKIVAEGHSYSAILTRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagactacaggcggaaagaaagcggcaggcaaaggctccgagcagccgaccacg
aaggtcacagaggccaggtccgcaacttccgcaacaaaaacgtctacccagagcgccacc
ccagcccggaagcgtacttccaccgtttccgccgcgcgagcggctccggtgcaggcggcg
aaagctgtcgcatcggtgaaggaaccgccgggcgccggaagcccgaaggaagacgcaagg
gacgcggctgccgcgcaggacgatgcggcagtgcgcgaatctccagtatccacggttcaa
ccggctgttgtccaccagccgcgagtcgagactacagccggtacggcgaactccatgacg
aaaaagctgaacgaagtatccgtcgatgacgacgcaaccacccagagcgaagaacccgca
acgactcccgctccgggcaaaggcgaaaaggccaaggcacgcgaccgccgcgcgaaggag
aaagcgctgctgaaggacgcattcgcctccacgcagccgggcaccgcggaagagctcgag
gagcgccgctcgaagctgcgcgcgctgatcaagctaggcaaggagcgtggcttcctgacc
tacgcggaaatcaacgaccacctgccggacaatttcgccgagaccgaggcgatcgaaggc
atcatcagcacgttcaacgacatgggcgtggccgtctacgagcaggcgcccgatgctgaa
acgctgctgctgaacgacaacgcgcccgccgcgtcgtcggacgacgaagtcgaagaggaa
gcggaagttgcgttgtcaacggtcgattccgaattcggccgcacgaccgacccggtgcgg
atgtacatgcgcgaaatgggcacggtcgaactgctgacgcgtgaaggcgaaatcgaaatc
gcgaagcggatcgaagatggcctgaagcacatggtcatggcgatctccgcgtgcccgacc
acgatcgcggacatcctcgcgatggctgagcgcgtcgcgaacgaagagatccgcatcgac
gaactggtcgacggtctgatcgacgaaaacgccgcagacgcggacggtttctcggagcag
gaagcggaagcgatcgagaacgaagacgaggaagccgaagaggacgaagaagaagaggaa
gaggacgacgacggcgccgcgcaagccacggcaaacgccgcgcagctcgaggccctcaag
cgcatgtcgctcgaaaaattcgcgctgatcagcgaatggttcgacaagatgcgccgcgcg
ttcgagaaggaaggctacaagtcgaagtcgtacctgaaggcgcaggaaacgatccagaac
gagctgatgagcatccgcttcaccgcgcgtaccgtcgaacgtctgtgcgacacgctgcgt
gctcaggtggacgaagtgcgtcaggtcgagcgtcagatcctgcacacggtcgtcgacaag
tgcggcatgccgcgtgccgagttcatcgcgcgtttcccgggcaacgaaacggacctcgag
tggtcggacaagatcgttgctgaaggtcattcgtacagcgcgatcctcacgcgtaacatc
ccggcgatccgcgaacagcagcagcgtctgctcgacctgcaggcgcgcgtcgtgctgccg
ctgaaggacctgaaggaaaccaaccgccagatggcggccggcgaactgaaggcgcgtcag
gccaagcgcgagatgaccgaagcgaacctgcgtctggtcatttcgattgcgaagaagtac
acgaaccgcggtctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaag
gcggtggacaagttcgaatatcgccgcggctacaagttctcgacgtacgccacgtggtgg
attcgccaggccatcacgcgttcgatcgcggatcaggcgcgcacgatccgtattcctgtt
cacatgatcgaaacgatcaacaagatgaaccgcatctcgcgtcagattctgcaggaaacc
ggtctcgagccggatccggcaacgctggccgagaagatggagatgccggaagacaagatc
cgcaagatcatgaagatcgcgaaggaaccgatctcgatggaaacgccgatcggcgacgac
gacgattcgcatctcggcgacttcatcgaagacacgaacacggttgcgccggccgacgcc
gcactgcatgccagcatgcgcgacgtcgtgaaggacgtgctcgactcgctgacgccgcgc
gaagcgaaggtactgcgcatgcgtttcggcatcgagatgagcacggaccatacgctcgag
gaagtcggcaagcagttcgacgtcacgcgtgagcggatccgtcagatcgaggcgaaggcg
ctgcgaaagctgcgtcacccgagccgttccgacaagctgaagtcgttcctcgaaggaaac
tga
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