Pedobacter endophyticus: IZT61_00190
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Entry
IZT61_00190 CDS
T07452
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pex
Pedobacter endophyticus
Pathway
pex02020
Two-component system
pex02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IZT61_00190 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IZT61_00190 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pex03021
]
IZT61_00190 (rpoN)
Transcription machinery [BR:
pex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IZT61_00190 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF1474
DUF1216
HTH_12
MarR
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QPH39738
UniProt:
A0A7S9PYR2
LinkDB
All DBs
Position
complement(40967..42439)
Genome browser
AA seq
490 aa
AA seq
DB search
MLKQHLQQKLLQKLSPQQIQFIKLLQVPTVALDTRVKEELEDNPALEDPSLMTQEEPKGE
YDDLNDGPDDFESSQEETSLDEFNVDDYLQDDTANDYSTNYNNGDDDEEKKETPIAIEST
FFESLQEQLDLIPLSDQDFIIGKQIIGSLDDDGYLRRPLMSMIDDLAFSQNVMVEEEDVL
EMLKLIQSFDPPGIGARDLKECLLIQLKRKDPNNPIIIKAMNVVENYLDEFTRKHYDKLE
KSLGLDSEELKEVVNEILRLNPKPGDANQVTTKQMQIIPDFHISNNDGVLILTLNSKNAP
ELKVSRSYQEMFEHYDKASSKDKKLKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAI
MHYQYEYFLTADERKMRPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEA
IQTENGEEVSNKEVKKILEDCIGNEDKRKPLADEKLTEILKERGYNIARRTVAKYREQMN
IPVARLRKEL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaacatttacaacaaaagttattacaaaagttatcacctcaacaaattcag
ttcattaaattgttgcaagtgccaaccgttgctttagatacaagggtaaaagaggagttg
gaagataatcctgcgcttgaagatccgagtttaatgacgcaggaagaacccaaaggcgaa
tatgacgatttaaatgatgggccagacgatttcgaaagctcgcaggaagaaacaagcctc
gacgaatttaatgttgatgattacctgcaagacgacacggcaaatgattatagcaccaac
tataataatggcgatgacgatgaagagaaaaaggaaacgccaattgcaattgaaagtact
tttttcgagagcctgcaagagcagttagacctgatccccctgtccgatcaggattttatt
atcggtaagcagattatcggaagtctggatgatgatggttatttacgtcgtccgctgatg
tcgatgattgatgatttggcattttcgcaaaacgtgatggttgaagaagaggatgttttg
gaaatgctaaagctgattcaaagtttcgaccctccgggcattggcgccagagacttaaaa
gagtgcttgcttattcagctaaagcggaaagaccccaataacccgattattattaaggcg
atgaacgtagttgagaattacctcgacgagtttacccgcaaacattatgataaacttgaa
aaaagccttggtttagatagcgaagagcttaaagaggtggttaacgagattttaagactg
aacccaaaaccgggcgatgccaatcaggttaccacaaagcaaatgcaaattattcctgat
tttcatatcagcaataatgatggtgttttgatcttgacactgaactctaaaaatgcaccc
gagttaaaggtgagccgctcttaccaggaaatgttcgagcattacgacaaggcttcctca
aaagataaaaaacttaaggaagctgttcagtttgttaaacaaaagctcgattcggcaaaa
tggtttatcgatgcgatcaaacagcgccaacagactttgcttaaaacaatgaatgccata
atgcattatcagtacgaatattttttaactgccgacgagcgtaaaatgcgcccgatgata
ttaaaggatattgctgataaaattgatatggatatttctacggtatcgagggtggcaaac
tcaaaatacgtgcaaacggaattcggaacatttttgttaaaatcgttcttttcagaagct
attcagaccgaaaacggagaagaagtttcgaataaagaagttaagaaaattcttgaagac
tgtatcggtaacgaagataagcgcaagcctttggccgacgagaaactgaccgaaatttta
aaagaaagaggatacaacatcgccagaagaactgtggcaaaataccgtgaacaaatgaac
attccggtggccaggttgagaaaggaactttaa
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