Pedobacter endophyticus: IZT61_00805
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Entry
IZT61_00805 CDS
T07452
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IZT61_00805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pex03019
]
IZT61_00805
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_00805
Enzymes [BR:
pex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IZT61_00805
Messenger RNA biogenesis [BR:
pex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IZT61_00805
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IZT61_00805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_41
DUF5805
TFIIE_alpha
Cas3-like_C_2
CBM87_Agd3
Motif
Other DBs
NCBI-ProteinID:
QPH39857
UniProt:
A0A7S9KZR2
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All DBs
Position
177591..179483
Genome browser
AA seq
630 aa
AA seq
DB search
MTAIEILQKYWGHPAFRPLQQEIITSVLEKKDTLALLPTGGGKSICFQVPALVNEGICIV
VSPLIALMKDQVENLKSRGIEAVAIYAGMGKREIDILLDNCIYGKIKFLYLSPERLLSDL
VRVRISYMNVNLIAVDEAHCISQWGYDFRPPYLQIAKLREILPDVPVLALTATATSFVRQ
DIMEKLEMKEPQVFVKSFARDNLSYVVFGQEDKYKKLIDICKNVGGTGLVYVRNRRETAE
VSNFINRNHIKADFYHAGLERAVRFQKQEDWKLNKTRIIVATNAFGMGIDKADVRFVVHL
DLPESLEAYYQEAGRAGRDEKRSYAVLLANQSDVMGLEARYIDTFPSADEIKKVYHYLGN
YFQLAFGAGEGITFTFDIADFCKRFNISVLKTISALKFLEHDGYIALSESVFLPSRLMFI
VGHEDVYRFQIENRAYDGVIKTILRSYGGAFDGFVKINEADLAKKLKVSFNDIVALLNKL
QSIEMLTYIQQTDQPQLQYIRPRVDMDHFDLDVKYLALRKEIMLKQINAVVAYTTSNKCR
SVQLLNYFDEHHAAKCGVCDVCLAEKRAENEVQINDEIEFEIVSLLQHQPLSLDELVQSI
KHGAENERIEAIRELLDAGKIKTDGKKYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatagagattttacaaaagtactgggggcacccggctttcaggccgctacaa
caagagattatcacttcggttttagaaaagaaagatacgcttgcactgttgccaacgggc
ggtggcaagtcgatttgcttccaggttcccgctttagtgaatgaaggcatttgtattgtg
gtttcgccgctcattgccttaatgaaagatcaggtggagaacctaaaatcgaggggaatt
gaagccgttgcaatctatgccggaatgggcaagcgagagatcgacattttgctcgataac
tgcatttatggcaaaatcaagttcctttacctttctcctgagcgcttgctgtctgatttg
gttcgggttagaatttcttacatgaacgtaaacctcatcgctgttgatgaggcgcattgt
atttcgcaatggggttacgatttccgtccgccgtatctgcagattgccaaattaagggag
attcttcccgatgtgcccgtgttggcccttacagcaacggcaacctcctttgtgcgtcag
gatattatggagaagctggaaatgaaagagccgcaggtttttgttaaaagctttgcccga
gataacctgagttatgtggtatttgggcaggaagataagtataaaaaactaatcgatatc
tgcaaaaatgtgggtggaaccggtttagtgtacgttcggaataggcgagaaacggcagag
gtttcgaactttattaatcgcaatcacatcaaagccgatttttaccacgccggccttgag
cgtgcggttcgatttcagaaacaggaagactggaaattgaacaaaacacgcattatcgtc
gctaccaatgccttcggaatggggattgataaggcagacgttcgttttgtggtgcattta
gatcttcctgaaagtttagaagcctattatcaggaagcggggagggccggaagagacgaa
aagcggagctatgccgttttactggccaatcaatcggacgtgatggggctcgaagcgcgg
tacatcgatacttttccttcggcagatgagattaaaaaagtttatcattatttgggaaat
tactttcaactggcctttggggcaggcgagggcatcacctttacattcgatatagctgac
ttttgtaagcgatttaacattagcgttttaaaaacgatttcggcgttaaagtttttggag
cacgacggatacattgccctatcggaaagcgtttttcttccatcgcggttaatgtttatc
gttggtcacgaagacgtttatcggtttcagatcgagaacagggcttacgatggcgtaatt
aaaacgattctccggtcgtatggcggtgcattcgatggctttgtgaaaataaacgaggcc
gacctggcaaagaaactgaaagtgtcgtttaacgatatcgttgctctgctcaataaactg
cagtcgatcgaaatgcttacctatattcaacaaaccgatcagccgcagttgcagtacatt
cgcccgcgtgttgatatggaccatttcgacctggatgtaaaatacctcgccttgagaaaa
gagattatgttaaagcaaatcaatgcggttgtggcttatactacatcgaacaaatgtcgg
agcgtgcagttgttaaactattttgatgaacatcacgcggcaaaatgcggtgtttgtgat
gtatgcctggcagaaaaacgtgcagaaaatgaagtgcagattaatgatgaaatcgaattt
gaaatcgtttctttactccaacatcaacccttaagtttagatgaattggtacagagtata
aaacatggcgcagaaaatgaacgaattgaggccattcgcgaattattagatgcaggcaag
attaaaactgatgggaagaagtattatctttag
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