Pedobacter endophyticus: IZT61_08680
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Entry
IZT61_08680 CDS
T07452
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IZT61_08680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pex03019
]
IZT61_08680
Enzymes [BR:
pex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IZT61_08680
Messenger RNA biogenesis [BR:
pex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IZT61_08680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UvrD-helicase
AAA_19
Cas3-like_C_2
ssDNA-exonuc_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QPH41313
UniProt:
A0A7S9Q059
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All DBs
Position
2186676..2187974
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AA seq
432 aa
AA seq
DB search
MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML
QLLHEKHINSKATKNIKALVLTPTRELAIQIEESFKAYGRHLNLRHLVIFGGVNQHSQVE
ALKRGVDILVATPGRLLDLMNQGFVNLNTIELFVLDEADRMLDMGFIHDVKRVVAKLPAK
RQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTAETIVQSVYFVDKPDKKKLLIHLL
EDKDIQTALVFTRTKHGADRIVKDLAHAGIKAAAIHGNKSQNARQRALTDFKDRKIRVLV
ATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGRTGRAGANGIAISFCDAEENEYLLDI
QKLIKITLPVVDDHPYPLSWESMLAKNQVKRKPQAQSKGGGGKKGGDGNMSGKPRNASNN
RRFGGNRKKAKA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaaagagttaaacctcattgagccgattttaaaggcacttgagaccgaaggt
tatacacaacctaccccaatacaggagcaatccataccaacaatattaaaaggaaaagat
ttattaggctgcgcacaaacaggtacaggtaaaactgcagcgtttgccatcccgatgttg
cagttactgcacgaaaaacacatcaacagtaaagccacaaaaaacataaaagcgttagta
ttaacaccaactcgcgagcttgccattcaaattgaagagagctttaaagcttacggacgc
catttaaatttgcgccatctggtcatttttggcggcgtaaatcaacactcgcaggtagaa
gcacttaaaaggggcgttgatattttggtagctacgcctgggcgtttactggatttaatg
aaccagggttttgtcaatttaaacaccattgagctttttgttcttgatgaagccgaccgt
atgctcgatatgggttttatacacgatgtaaaaagagtggtagcgaaattgcctgcaaaa
cgccaaaccttgtttttctcggccactatgcccgatgaaattcaaaagctggccaacacc
attctctccagcccaacaaaggtagaggttacgccaatttcgtcgactgccgaaaccatc
gttcaatcggtttattttgttgataagccagataaaaagaagttattgatccatttattg
gaagataaggacattcaaactgctttggtttttacgcgtaccaagcatggcgccgataga
attgttaaagatttagcccatgcggggataaaggctgcagctattcacggaaataaatcg
caaaatgctagacaaagagcgttaactgattttaaagaccggaaaattcgtgtgttggta
gctactgatatcgcggcccggggcatcgatattgatcagttatcgcacgttttcaacttt
gagctgccaaatattcccgagtcttacgtacaccgcattggccgtactggtcgtgcagga
gcaaatggtattgctatttcattttgcgatgctgaagaaaacgaatacttactggatatc
cagaaactgattaaaattaccttaccggttgttgatgatcatccgtatccgttaagctgg
gaaagtatgctggccaaaaatcaggttaaacgcaaaccgcaggcacagtccaaaggtggt
ggcggcaaaaaaggcggcgatggaaatatgagcggcaaaccacgtaatgccagcaataac
aggcgctttggtggtaacagaaaaaaagccaaagcttaa
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