Pedobacter endophyticus: IZT61_09140
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Entry
IZT61_09140 CDS
T07452
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IZT61_09140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pex03021
]
IZT61_09140
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_09140
Enzymes [BR:
pex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IZT61_09140
Transcription machinery [BR:
pex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IZT61_09140
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IZT61_09140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QPH41398
UniProt:
A0A7S9L2T0
LinkDB
All DBs
Position
complement(2302255..2303247)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGTFEFRPLEPGFGVTIGNALRRILLSSLEGYAITTIRFS
GVSHEFSTMKGVVEDLTDIILNLKQVRFKKTGDSGDAEKVFIIVNGQDQFKAGDITKFSN
NFTVLNPEHVICNMDKAVTLEVELTINKGRGYVPAEENKVADAVVGVIAIDSIYTPMKNV
KYTIENFRVEQKTDYEKLVLDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDMDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKGLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaaccagacaaagtgatcatgcagaaatcgacagatttc
gatggtacatttgaatttcgtcctttagagcccggtttcggtgtaacaattggtaatgcc
ttaagaagaattttactttcttctttagaaggttatgctattactactattcgtttttca
ggcgtttctcatgagttttctaccatgaaaggtgttgtagaagatttaaccgatatcatt
ttgaacttaaagcaagtacgttttaagaaaactggtgattctggtgatgctgaaaaagtt
ttcatcattgtaaacggtcaagatcagtttaaagctggtgatattactaaattctctaat
aactttaccgttttaaaccctgagcatgttatttgtaacatggataaagcggttacttta
gaagttgaattaaccattaataaaggtcgtggttatgttcctgctgaagaaaataaagtt
gctgatgctgttgtaggtgttatcgctatcgattcgatctacacaccaatgaaaaacgtt
aaatacacaattgaaaacttccgtgttgaacaaaaaacggattatgagaaattggtatta
gatatttcaactgatggttcaattcatcctgaagaagcattaaaagaagcggctaagatc
cttatccaacactttatgttgttctctgatgagaacctggtattagaatctcaggcaaaa
gaagaaactaaagaagttgatgaggaaattttacacatgcgtaaaatccttaaaactgaa
ttagtagatatggatctctcagttagagcattaaactgcttaaaagctgccgatatccgt
actttagctgatttggtttcttacgatgttgctgatatgttaaaattcagaaacttcggt
aaaaaatcattaacagagattcaagagcttgtaaaatcaaaaggtttatctttcggaatg
aacctgtctaaatttaaattagacgaagaataa
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