Pedobacter endophyticus: IZT61_10875
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Entry
IZT61_10875 CDS
T07452
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pex
Pedobacter endophyticus
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pex03016
]
IZT61_10875
Enzymes [BR:
pex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IZT61_10875
Transfer RNA biogenesis [BR:
pex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IZT61_10875
Prokaryotic type
tRNA splicing ligases
IZT61_10875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF993
Motif
Other DBs
NCBI-ProteinID:
QPH41717
UniProt:
A0A7S9L3C2
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All DBs
Position
2697282..2698706
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AA seq
474 aa
AA seq
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MKTDISGKDLLEIGFTEGKILGLALDILKDNFEDVEEDELLALFKKVKDYPESFLDDEVL
SQLATALIEDAKPKSDGTIKLVENAEDYSIFGVDYIEEGARKQMDIAMKLPVSVAGALMP
DAHQGYGLPIGGVLATRNAIIPYGVGVDIGCRMALSIFDIPEKHYFGKDAMYKRELIAFT
KFGAGQNFKGNEKADHEVLENDAFNSTPLLRNLHGKAWAQLGTSGGGNHFVEWGIIEFAE
RDETLKIDKGRYVALLTHSGSRGFGATIAGHYTKLAKKICKLPKEALNLAYLDLNSAEGQ
EYWIAMNLAGDYASACHEVIHKRLTKAIGAKVLAKVENHHNFAWKEMLDGEEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGETNAINSASHGAGRQMSRTKAIQSITRSEMKAIL
KDHNVTLIGAGLDEAPMAYKDINKVMAAQTELVNVVAKFEPKMVRMADDGSRED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacagacatatcaggaaaagaccttttggaaataggcttcaccgaagggaaaata
ttaggcttagcactagatatcttaaaagataatttcgaagatgttgaagaagacgagctg
ttggccttgttcaaaaaagtaaaagattatccagagagttttttagatgacgaagtgttg
agccaattggcaacggcgcttattgaagatgccaagccgaaatcggatggtacgattaaa
ctggtcgaaaatgctgaggattactccattttcggcgtcgattatattgaagaaggtgca
aggaagcaaatggacatcgccatgaagctgccggtttccgtagcgggcgcactaatgccc
gatgcacaccaaggctatggtttgccaatcggtggtgtgttagccactcgaaatgccatt
atcccctacggcgttggggtagatattggttgtagaatggccttgagtatcttcgatatt
cccgaaaagcattatttcgggaaagatgccatgtacaaacgcgaattaattgcttttacc
aagtttggtgcagggcaaaattttaagggaaatgaaaaagccgaccacgaagttttggaa
aatgacgccttcaattcgacaccacttcttcggaatttacacggaaaggcttgggcgcaa
ctgggtacttcgggcggcggaaatcattttgtagaatggggaattattgaattcgctgag
cgagatgagacgctaaagatcgataaaggacgttatgtggcgctattgacgcattcgggt
tctcgtggctttggcgccaccattgccgggcattacaccaaactggcgaaaaaaatctgt
aaactcccgaaagaggctttgaatttggcgtatctggatttaaattctgctgagggacag
gaatattggattgccatgaacctggccggcgattatgcttccgcttgccacgaggtgatc
cataaacgcttaactaaagccattggcgcaaaggttttggccaaagtagagaaccatcat
aattttgcttggaaagaaatgcttgatggagaagaggtaattgttcatcgaaaaggtgct
acacctgctggaaagggcgtaatgggcataattccggggagtatgacagcacccggtttt
ctggttaggggaaagggcgaaaccaatgccattaactcggcatcgcatggcgcaggtagg
caaatgagtcgtaccaaagccattcaaagcattacccgctctgaaatgaaagccattttg
aaagaccacaatgttacgctaattggagctggcttagatgaagcgccaatggcttataaa
gacattaataaagtaatggctgcacaaaccgaattggttaatgttgttgccaagtttgaa
ccgaaaatggtgcgcatggctgatgatggaagtagggaggattga
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