Pedobacter endophyticus: IZT61_11380
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Entry
IZT61_11380 CDS
T07452
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03030
DNA replication
pex03410
Base excision repair
pex03420
Nucleotide excision repair
pex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IZT61_11380 (polA)
03410 Base excision repair
IZT61_11380 (polA)
03420 Nucleotide excision repair
IZT61_11380 (polA)
03440 Homologous recombination
IZT61_11380 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pex03032
]
IZT61_11380 (polA)
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_11380 (polA)
Enzymes [BR:
pex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IZT61_11380 (polA)
DNA replication proteins [BR:
pex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IZT61_11380 (polA)
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IZT61_11380 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IZT61_11380 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
HHH_5
DUF3913
DUF2203
HHH
Motif
Other DBs
NCBI-ProteinID:
QPH37716
UniProt:
A0A7U3SP64
LinkDB
All DBs
Position
2803923..2806733
Genome browser
AA seq
936 aa
AA seq
DB search
MNNKKLFLLDGMALMYRAHFALSKNPRLTSTGINTSAVMGFTNTLLDVIKKENPTHIAVV
FDTEAPTERHTTFEAYKAHRQAMPEDLAAAMPYVIKLITGFNIPVITSDGYEADDIIGTL
AKKAEARGFQVFCMTPDKDFAQLVSENIFIYKPARMGNGMEILGVKEVLAKWEIEHVHQV
IDILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSMENIIANSHELKGKQRENVENFAEQG
LVSKKLATILLDVPVELDEATLELCDPSRDLLEPLFTELEFRTLGRRVFGDEFSVTTARF
QEGTQTDLFGNQSGEAIQYTDTLEEEVAEPLPAKNIENTEHDYQLVDTAEKRADLIKLLL
AEPTVSFDTETTGTDANTAELVGLSFSIKPGTGYYIPVSAVRAEAQAVVDEFRVILENEQ
IIKIGQNTKYDILVLKWYGVEVKGKLFDTMLAHYLIDPDTRHGMDVLSENYLGYTPISIT
KLIGAKGKNQGTMRDVPVEQVVDYAAEDADVTLQLANIFEPKLKELNATKLAEEIENPLV
YVLADIEKEGVRIDMDTLRAYSAELEVEIKKSEQSVYDKAGVTFNLASPKQLGEVLFDKL
QLDPKAKKTKTGQYQTGEDILTALASKSDIVQDILDFRQMQKLKSTYVDALPLMVNPKTG
RVHTSYNQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIARDENHILLSADYSQIELR
IIAEISKEENMLDAFSKGIDIHTATAAKVYGVSIEEVDSTQRRNAKAVNFGIIYGQSAFG
LSQNLGIPRKEAAEIIEQYFAQYPGIKRYMSDTMNFARENGFVETIMGRRRYLRDINSAN
QTVRGFAERNAINAPIQGSAADMIKIAMINIHKEMKAQKLQSTMTMQVHDELVFDVLKTE
KDVMKAIIEDKMANAIKLTVPIVVEIGEGDNWLAAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaaaactctttcttttagatggaatggcgctgatgtacagggcgcacttt
gcattgagcaaaaaccctcgtttaacttcgacaggaatcaatacatcggcagtaatggga
tttaccaatactttgttggatgtaattaagaaagaaaacccaacacatattgccgtagtt
ttcgataccgaggcaccaacagaaaggcataccacttttgaggcctataaagcgcaccgc
caggccatgcccgaagatttggccgcggcaatgccctatgtaattaaactgataacaggt
ttcaatatccccgtcatcacctccgatggttacgaagccgacgatattattggtacactt
gcaaaaaaagctgaagcaaggggctttcaggtgttttgtatgacacccgataaggatttt
gcccaactggtttctgaaaatatttttatttacaaacctgcccgtatgggtaatggcatg
gaaattttaggtgtaaaagaagtgttggcgaagtgggaaattgaacatgtacaccaggtg
attgacattttgggcctttggggcgatgctgttgataacattcctggaattccgggaatt
ggcgaaaaaacagccaaagccctgattaagcagtacggttcgatggaaaatattatcgca
aactcgcacgagcttaagggaaaacaacgcgaaaacgtagaaaatttcgccgagcagggc
ttagtctccaaaaagctggccaccatactgctcgatgtgccggttgaattagacgaagcg
actttagaactttgcgatccgagtcgcgatttgttagagcctctatttactgagctcgag
ttcagaacactgggtcgcagggtgtttggcgatgagttttcggttaccacggcccgcttt
caggaaggaacacaaaccgacctgttcggaaaccaatctggcgaggccattcaatatacc
gataccctcgaagaagaggttgctgaaccacttccagcaaaaaacatagaaaataccgaa
cacgattaccaacttgtagatactgcagaaaaacgtgccgatttaattaaattgctgttg
gccgaaccaacggtatctttcgacaccgaaacaacgggaaccgatgccaacacggctgaa
ttggtaggactgtcattttcgataaaaccgggaacgggttattatatccccgtttcggca
gttagggccgaggcacaggccgttgttgatgagtttagagtgatacttgaaaacgaacag
attataaagattggccaaaacaccaaatacgatattctggtgctgaaatggtacggtgtt
gaagtaaaaggcaaactatttgatacgatgctggcccattacctcatcgatcctgatacc
cgccacggcatggatgtattatctgaaaattatttaggctatacgcccatttccatcacc
aaacttattggcgcaaaaggcaaaaaccagggaaccatgcgtgatgttccggtagaacaa
gtggtagattatgccgccgaagatgcagatgtgaccttgcagctggccaatatttttgag
cctaagttgaaagaactcaacgccaccaaactggccgaagaaatagaaaaccctttggtg
tacgtgttggccgatattgaaaaagaaggcgtgcgcatagatatggatacgctgagggct
tattctgccgaactggaagttgagattaaaaaatcagagcaaagcgtttacgataaagcc
ggggttacgtttaatttagcttcgccgaaacagttgggtgaggttttgtttgataagctc
cagctcgacccaaaagccaaaaaaacaaaaacggggcaataccaaaccggcgaagacata
ttaaccgcattagccagcaagagcgatattgtgcaggatattctcgatttccgccagatg
cagaaactgaaatcgacttatgttgatgcattgccgctgatggtaaaccccaaaaccgga
cgtgtacatacttcgtacaatcaggcggtggctgcaaccggcagattgagctctaacaat
cccaatttgcagaatattccaattcgtaccgaacggggaagagaagtgcgtaaagccttt
attgccagagatgaaaaccacattttgttatctgccgattattcgcaaattgaattgcgc
attatcgccgagatcagcaaagaagaaaacatgctcgatgcatttagcaagggtatcgat
atccacacggcaaccgcagcaaaagtgtacggagtgagtattgaagaggttgatagcacc
caacgcagaaatgccaaagcggtaaattttgggattatttacgggcagtcggcgttcggc
ctgtcgcagaatctgggcatcccacgcaaggaagcggcagaaatcatcgaacaatatttt
gcccaatatcccggcataaaacggtacatgagcgataccatgaactttgcccgcgaaaac
ggctttgtagaaacaataatgggcagaagacgctacctaagagacattaattcggccaac
caaactgtacgtggtttcgccgaacgaaacgccataaatgcaccaattcagggttctgct
gccgacatgatcaagattgcaatgattaacattcataaagaaatgaaagcacaaaagctg
caatcgaccatgaccatgcaagtacatgatgagttggttttcgacgtgctcaaaacagaa
aaggacgttatgaaagcaattatagaagataaaatggccaatgccattaagcttaccgtc
cccattgttgtcgaaattggcgaaggcgataactggttggcagcacattaa
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