Pedobacter endophyticus: IZT61_12190
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Entry
IZT61_12190 CDS
T07452
Name
(GenBank) very short patch repair endonuclease
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
pex
Pedobacter endophyticus
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_12190
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
IZT61_12190
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vsr
DUF559
MTES_1575
Motif
Other DBs
NCBI-ProteinID:
QPH37871
UniProt:
A0A7U3SQ29
LinkDB
All DBs
Position
3012249..3012734
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AA seq
161 aa
AA seq
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MDGQKKNFLKPSLGDIGIVIPASRSYNMSRIKAKNTKAELRLRKALWAKNIRFRIHPTGV
IGKPDIFIAKYHLVIFVDGDFWHGYKWNENKDRIKSNADFWIAKIERNMKRDVNVNLALS
QIGFTVMRFWEHQVKSELDKCVNQVVLYIESSKLSLIPDKE
NT seq
486 nt
NT seq
+upstream
nt +downstream
nt
atggatggtcaaaaaaaaaactttttgaaaccctctttgggggatatcggtattgtgatc
cctgcctcgcggagttacaatatgtctcgtatcaaggcaaaaaacaccaaggctgaacta
cgtttaagaaaagctctttgggcgaaaaatatacgcttcagaattcatcccaccggggta
atcggaaaacctgatatttttatcgctaaatatcatttagtcatttttgttgatggcgat
ttttggcatggttacaagtggaatgagaataaggatcgtatcaaaagtaatgcagatttt
tggattgcaaagattgaacgaaacatgaagcgtgatgtaaacgtcaatcttgctctttca
caaataggattcacagttatgcgtttttgggagcatcaggtgaagtccgaacttgataag
tgcgtaaatcaggtagtcctctacatcgaatctagtaaactaagtcttattcctgataag
gaatga
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