Pedobacter endophyticus: IZT61_13570
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Entry
IZT61_13570 CDS
T07452
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
pex
Pedobacter endophyticus
Pathway
pex02024
Quorum sensing
pex03060
Protein export
pex03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
IZT61_13570 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
IZT61_13570 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IZT61_13570 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pex02044
]
IZT61_13570 (ffh)
Enzymes [BR:
pex01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
IZT61_13570 (ffh)
Secretion system [BR:
pex02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
IZT61_13570 (ffh)
Eukaryotic Sec-SRP protein
IZT61_13570 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
Zeta_toxin
AAA_22
APS_kinase
SRPRB
nSTAND3
cobW
AAA_17
AAA_24
CbiA
AAA_31
nSTAND_NTPase7
MMR_HSR1
AAA_18
AAA_25
NACHT
PRK
AAA_30
ArsA_ATPase
ATP_bind_1
Thymidylate_kin
ATPase
AAA_33
AAA
AAA_16
NPHP3_N
TsaE
Motif
Other DBs
NCBI-ProteinID:
QPH38126
UniProt:
A0A7U3SQA8
LinkDB
All DBs
Position
complement(3345536..3346876)
Genome browser
AA seq
446 aa
AA seq
DB search
MFDNLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKSFTDEVRQKAL
GQNVLTAVSPGQLLTKIMNDELAALMGGEVTELETKANPTIILIAGLNGAGKTTFAGKLA
LHLKGKGKKPLLVAGDMYRPAAVDQLEVLGTSVGVSVYANRQSNDPVGIAQEGIEHGKQN
GNNVIIIDTAGRLAIDESLMNEISEVKAKTQPHEILFVVDSMTGQDAVNTAKVFNDRLDF
TGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRILGMGDVVS
LVERAQMQFDEKEAAELQKKIRKNKFDFNDFYNQIQQIKKMGNMKDLMGMIPGVGKMMKN
VDIQDDAFKSIEAIINSMTPFEKENPDAIQQSRRLRIAKGSGSKVEEVTKLIKQFEDMRK
MMKQFSNPAAAAAMMKGMPKMPFGKR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtttgataatttacaggacaagctagacagagcatttaaggtattaaagggacaaggc
agcattacggaaatcaacgttgcagaaacgatgaaagagatccgcaaagcgctgctggat
gccgacgtgaactataaaacggctaagtcgtttaccgacgaagtaaggcaaaaagctttg
gggcagaatgtgttaaccgcagtttcgccgggacaattgcttaccaaaatcatgaacgac
gagcttgcggccttaatgggtggcgaggttacagagcttgaaacgaaggcaaatccaacc
attattttaattgccggtttaaatggtgcgggtaaaactactttcgctggtaaattggct
ttacatttaaagggtaagggcaaaaaaccgctgttggttgctggcgatatgtatcgcccg
gcggcagtagatcagttagaggttttaggtacttcggttggcgtttcggtttatgcaaat
cgtcaatctaacgatcctgtaggcattgcgcaagaaggtatcgagcacggtaagcagaac
ggaaataatgtaatcattatcgataccgcaggtcgtttggccatcgacgaatcgttgatg
aacgagatatcggaagttaaggccaaaacccaaccgcacgagattttattcgttgtggat
tcgatgactggacaagatgctgtaaataccgccaaggtgtttaacgatcgtcttgatttt
accggcgttgttttgaccaaactagatggcgatacccgcggtggtgcagcgctttcgatc
aaatcggtagtaaacaaaccgattaagtttattggtacgggcgagaaaatggaagcactt
gatgttttctatcctgaccgtatggcttcgcgtattttgggaatgggcgatgtggtttcg
ttggttgaacgtgctcaaatgcagttcgacgagaaagaagcagcagagttacagaagaag
attcgcaaaaataaattcgacttcaacgacttctacaaccaaattcagcagatcaagaaa
atgggtaacatgaaagatttgatggggatgattccaggagtgggaaagatgatgaaaaac
gttgatattcaggatgatgcttttaaatcaatcgaagctataattaattcgatgacacca
tttgagaaagaaaaccctgacgcgattcaacaaagtcgtcgcttacgcattgcaaagggt
tcgggcagtaaagtggaggaagtaaccaagttgattaagcagtttgaagatatgcgcaaa
atgatgaagcagttttcgaaccccgcagccgcagcagcaatgatgaaaggaatgcctaaa
atgccgttcggtaaaagataa
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