Pedobacter endophyticus: IZT61_15505
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Entry
IZT61_15505 CDS
T07452
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pex
Pedobacter endophyticus
Pathway
pex02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IZT61_15505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pex03021
]
IZT61_15505
Transcription machinery [BR:
pex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IZT61_15505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
GerE
HTH_24
HTH_Tnp_ISL3
Xre-like-HTH
Sigma70_ECF
HTH_11
MarR_2
TackOD1
HTH_37
HTH_28
HTH_23
HTH_17
Motif
Other DBs
NCBI-ProteinID:
QPH38481
UniProt:
A0A7U3SPW4
LinkDB
All DBs
Position
3798057..3798635
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AA seq
192 aa
AA seq
DB search
MSTYKSLTDLEIFVLMQEGDKFAFEEIYERFNGLLYIYACKMVSNREDARDIVQEIFVYL
WSNPNIQIKTQLSSYLYTAVRYKVFDWLDKNKSRSNYLQSLTDFAEKGDYVTDNYIRERE
FASLIEKEVSLLPPKMRLIFEMSRQQHLTQKQIAEILQLSDKTVKKQMSNALKVLRLKLT
SFLLLAVIVLIR
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacttacaaatcgctaactgatcttgagatcttcgttctgatgcaggagggagat
aagttcgccttcgaggaaatttacgagcgctttaatggtttgttatacatttacgcctgt
aaaatggtaagcaatagggaggatgcccgtgatattgtgcaggagatttttgtttacctg
tggagcaacccaaatattcagatcaaaacgcaactttcatcttatttatatactgcggtt
cgctacaaggttttcgattggttggacaaaaataaatcgcggtcgaattatttgcaatcg
ctgacagattttgcagagaaaggcgattatgtaacggataattacattcgtgaaagagaa
tttgcttcgctaattgagaaagaagtaagcttgctgccgccgaagatgagattgattttt
gaaatgagcaggcaacagcaccttacccaaaaacaaattgcagaaattcttcaattgtca
gacaaaacagttaaaaaacaaatgagcaatgcgcttaaggttttaagattaaaattaact
tcgtttttgttgctggctgttatagttttaatccgttaa
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integrated database retrieval system