KEGG   Pedobacter endophyticus: IZT61_15505
Entry
IZT61_15505       CDS       T07452                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pex  Pedobacter endophyticus
Pathway
pex02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pex00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    IZT61_15505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pex03021]
    IZT61_15505
Transcription machinery [BR:pex03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     IZT61_15505
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 GerE HTH_24 HTH_Tnp_ISL3 Xre-like-HTH Sigma70_ECF HTH_11 MarR_2 TackOD1 HTH_37 HTH_28 HTH_23 HTH_17
Other DBs
NCBI-ProteinID: QPH38481
UniProt: A0A7U3SPW4
LinkDB
Position
3798057..3798635
AA seq 192 aa
MSTYKSLTDLEIFVLMQEGDKFAFEEIYERFNGLLYIYACKMVSNREDARDIVQEIFVYL
WSNPNIQIKTQLSSYLYTAVRYKVFDWLDKNKSRSNYLQSLTDFAEKGDYVTDNYIRERE
FASLIEKEVSLLPPKMRLIFEMSRQQHLTQKQIAEILQLSDKTVKKQMSNALKVLRLKLT
SFLLLAVIVLIR
NT seq 579 nt   +upstreamnt  +downstreamnt
atgtcaacttacaaatcgctaactgatcttgagatcttcgttctgatgcaggagggagat
aagttcgccttcgaggaaatttacgagcgctttaatggtttgttatacatttacgcctgt
aaaatggtaagcaatagggaggatgcccgtgatattgtgcaggagatttttgtttacctg
tggagcaacccaaatattcagatcaaaacgcaactttcatcttatttatatactgcggtt
cgctacaaggttttcgattggttggacaaaaataaatcgcggtcgaattatttgcaatcg
ctgacagattttgcagagaaaggcgattatgtaacggataattacattcgtgaaagagaa
tttgcttcgctaattgagaaagaagtaagcttgctgccgccgaagatgagattgattttt
gaaatgagcaggcaacagcaccttacccaaaaacaaattgcagaaattcttcaattgtca
gacaaaacagttaaaaaacaaatgagcaatgcgcttaaggttttaagattaaaattaact
tcgtttttgttgctggctgttatagttttaatccgttaa

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