Pedobacter endophyticus: IZT61_17335
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Entry
IZT61_17335 CDS
T07452
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pex
Pedobacter endophyticus
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pex03009
]
IZT61_17335 (rlmD)
Enzymes [BR:
pex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IZT61_17335 (rlmD)
Ribosome biogenesis [BR:
pex03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IZT61_17335 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Cons_hypoth95
PrmA
UPF0020
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QPH38816
UniProt:
A0A7U3SQW6
LinkDB
All DBs
Position
4227281..4228693
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AA seq
470 aa
AA seq
DB search
MSRRKSGTVTIVPNVHIIDIAEEGKGVGKADELVIFVDKAVPGDVVDVRLTKKKKNFAEA
VIEQLHEGSALRTDPFCPHFGTCGGCKWQHMGYDSQLKFKQKNVEAALQRLGKIDTSHAE
PILGSAKNRYYRNKLEFTFSNKRWLEKTDVERDEDFDMNALGFHVPLRFDKILDIEHCYL
QDEPSNSIRNAVRKYALENNISFYDLRNHEGALRNLIIRTSSTGEVMVAVVFAYPQANEI
DGMMGFLKDGFPQVTSLLYIVNQKKNDTIFDQEVNVFAGRDHIFEQMDGIRFKIGVKSFY
QTNSEQAFELYKITRDFAGFTGDELVYDLYTGAGTIANFIARDVKQVVGVEYVPTAIEDA
KFNSELNGIDNTIFYAGDMKDILTAEFILAHGKPDVVITDPPRAGMHADVVQRLLEMEAE
KIVYVSCNAATQARDLEMLKEKYDVVRIKPVDMFPHTQHVENVVLLRLKA
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaagaaaatcaggaacggtaaccattgttccgaatgtacatataattgatatc
gctgaagaaggaaaaggcgtgggcaaggccgatgaactggtcatttttgtagacaaggct
gtgcccggcgatgtggttgatgttcggttgaccaagaagaaaaaaaactttgccgaagcg
gtaattgaacagttgcacgagggatcagctttacgcaccgaccctttttgtcctcacttt
ggcacttgcggaggttgcaaatggcaacatatgggttacgattcacaattaaaatttaag
caaaagaacgtggaggctgcgttacaacgccttggcaaaattgatacttcgcatgcagaa
ccgattttaggctccgctaaaaatagatattaccgcaataaactcgaatttacattttct
aataagcgttggctcgaaaaaactgatgtagaacgtgatgaagacttcgacatgaatgcg
ttgggctttcatgttccgcttcgttttgataaaattttggatattgaacattgctatttg
caggatgagccgtctaactcgatcagaaacgcggtgcgtaaatacgctttagaaaataat
atctcgttttacgatttacgcaaccacgagggggcattgcgcaatctgattatccgcaca
tcgagcacaggcgaagtgatggttgccgttgtgtttgcttacccgcaggccaatgagatt
gatgggatgatgggctttttaaaagacggatttccgcaggttacctcacttttatatatt
gttaaccaaaaaaagaacgataccatttttgatcaggaggtgaatgtttttgcgggccgc
gatcatatttttgagcagatggatggtatcagatttaagattggcgtaaaatcattctat
caaaccaattcagagcaggcgtttgagttgtataaaattacaagagactttgcgggtttt
actggcgatgaattggtttacgatctttacaccggggccggaacaattgcgaattttatt
gccagggatgttaaacaggttgtgggcgtagagtatgtgccaacggcgatagaagatgcg
aagtttaactctgaattgaacggaatagacaacaccattttttatgcaggagacatgaag
gacattttaactgcagaatttattttggcacatggtaagccagatgtggtcataaccgat
ccgccgcgggccggcatgcatgccgatgtagtgcagcgcttgcttgaaatggaggctgaa
aagattgtttatgttagctgtaatgccgctacacaggcccgagacctggaaatgttgaaa
gagaaatacgatgttgtgcgcattaagcctgtagatatgtttccacatacgcaacacgtt
gaaaatgtagttttattaaggttaaaggcatag
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