Pedobacter endophyticus: IZT61_21870
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Entry
IZT61_21870 CDS
T07452
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pex
Pedobacter endophyticus
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pex03032
]
IZT61_21870
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_21870
Enzymes [BR:
pex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IZT61_21870
DNA replication proteins [BR:
pex03032
]
Prokaryotic type
DNA Topoisomerases
IZT61_21870
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IZT61_21870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QPH39649
UniProt:
A0A7S9KZV3
LinkDB
All DBs
Position
5358285..5359328
Genome browser
AA seq
347 aa
AA seq
DB search
MVQGKDVVKESGLVYVTDTMPGLYRKGKPGKFYYEDKDGNKVSDEKHLARIKALVIPPAW
QNVWIANKPNAYLQVTGIDAAGRKQYKYHTKWTSRRSEHKYFRLLEFGRALPNARKNLAK
DLRRKEFDERKVLAISVDVLQKTLIRVGNESYKQLYGSFGLTTLRDKHVKINGSKIVMDF
IGKKGVKQQLELNDRSLARMVKKCRDIPGQELFQFYTNGKEHKSIDSGKINSYIKEITGD
DFTAKDFRTWGGTLEALRQFAKCSVDEDLQLNSKKTIVKVLDCVAQKLGNTRAVCKSSYV
YPLLITAYENNELEKYLKMMNKNKATSKVGLAHDEKVLLSFLKSTNK
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaggcaaagatgttgttaaagagagcggattagtttatgtaaccgatacgatg
cctggtctttatcgaaagggcaaacccggaaaattttattacgaagacaaagacggcaac
aaggtttccgatgagaaacaccttgcccgtataaaggcacttgttataccgccagcgtgg
caaaatgtatggatagccaataaaccaaatgcctacctgcaggttacggggatagatgca
gcggggcggaagcaatacaagtatcacaccaaatggacaagtcgccgctctgagcataaa
tacttcaggcttctggagtttggcagggctttgccgaatgcccgcaagaatttggccaaa
gatttgcgccgaaaagagtttgacgaaagaaaggtgctggccatttcggtcgatgtattg
caaaaaacgctgattagggtagggaacgagagttataagcagctttatggatcgtttggg
ttaacaacgcttcgtgataagcacgtaaaaatcaacggcagtaaaatcgttatggatttt
ataggcaaaaaaggggttaagcagcaattggaacttaacgatcgatcgttggccagaatg
gtgaaaaaatgccgcgacattccggggcaggagctatttcaattttataccaacggaaaa
gagcataaaagcatcgattcgggcaaaataaacagctatatcaaagaaattacgggtgat
gactttacggcgaaagattttaggacctggggtggaacgctcgaagccttacgtcaattt
gccaagtgcagcgtagatgaagatttgcaattgaattcgaaaaaaacaatagttaaggtt
ttggattgtgttgcccaaaaacttgggaatacgcgggccgtttgtaaaagctcttatgtt
taccccttgctaattaccgcctacgagaataatgaattggagaaatacctgaaaatgatg
aataaaaacaaggccaccagcaaagttggtttggcgcatgatgaaaaagtgttattgtca
tttctaaaatccacaaataaatag
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