Pseudomonas extremorientalis: LUU92_25925
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Entry
LUU92_25925 CDS
T11956
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pext Pseudomonas extremorientalis
Pathway
pext03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pext00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LUU92_25925 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pext03021
]
LUU92_25925 (rpoC)
03400 DNA repair and recombination proteins [BR:
pext03400
]
LUU92_25925 (rpoC)
Enzymes [BR:
pext01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LUU92_25925 (rpoC)
Transcription machinery [BR:
pext03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LUU92_25925 (rpoC)
DNA repair and recombination proteins [BR:
pext03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LUU92_25925 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
BSH_YknX
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UUN88246
LinkDB
All DBs
Position
complement(5717507..5721706)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattgggttggcatcgccagagatgatccgttcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtacgttcaaacctgaacgtgatggcctgttctgcgccaag
atctttggcccggttaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgtatggcgcacatcgaactggcttcgccggttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagttgctg
aacgacgagcagtacttcgaagcgctggaagaattcggtgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggaacacgagattggccgc
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaaactgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccagacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagctgtcgatgccttgctcgacaacggtcgccgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactctggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctgttcaagccattc
atcttcggcaagctggaaatgcgcggtcttgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttctcgctgaggtgatccgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgttggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagca
cgtgcattgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgctgacctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcattgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgaccgtgac
ggcggcagcgtgaccaacactcgtatcgtcgacaccactgtcggccgtgcgctgttgtat
caagttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagttgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtataccggttttgcttactcgaccatttccggcgtttccatcggc
gttaacgactttgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgaagaa
gtgaaagaaatcgaaagccagtacgcctccggcctggtaacccagggtgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgatgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgacgaagttgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaactgctaactccggttacctgactcgtcgtctg
gtagacgttgcacaagatctggttgtaaccgagattgattgcggcaccgagcatggcctg
ctgatgacgccgcacattgaaggcggtgacgttgtagaaccgctgggtgagcgcgtattg
ggtcgtgtgattgcccgtgacgtgttcaagccaggtaccgaggaagttattgttcctgcc
ggcaccctggtagacgagaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatctgcgccaaatgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaaacacgttgagcgagtggatggccacctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgcgagcgttacaaactgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaattgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggtaaagacatccgtcctgccgtgaagatg
gtcgatgacaacggcaaggacttgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaaaacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattacgccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtgctggtggaaaacgagcgcttggcgaccgaagacaaattcgtgtcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtcgactgaatcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggttgtgggtcgtctgatcccagccggt
accggtttggcttaccacagcgagcgtaaacgccgccgtgatgctgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactccagcggtaactga
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integrated database retrieval system
