Pseudomonas extremorientalis: LUU92_26890
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Entry
LUU92_26890 CDS
T11956
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pext Pseudomonas extremorientalis
Pathway
pext03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pext00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LUU92_26890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pext03019
]
LUU92_26890
Enzymes [BR:
pext01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LUU92_26890
Messenger RNA biogenesis [BR:
pext03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LUU92_26890
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
UUN88422
LinkDB
All DBs
Position
5932610..5934493
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSATSGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDV
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTPP
AKRNGPRNGAPRDGQARREDSRNNNRRPARDDQPRLSEPAVQNPRGGPAPKIIHKESKVD
RFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgcggctcagacaggtacgggtaaaaccggcggtttcgccctcccgattctg
gagcggttgttccccaacggtcatccggacaaatcccagcgtcacggcccacgccaaccg
cgtgtactggtcctgaccccaacccgcgaactcgccgcccaggtgcatgacagcttcaag
ctgtatgcccgcgatctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggcgtcgacgtgctggtggcctgccccggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgacttgtcccacgtggaaatcctcgtgctggac
gaagccgatcgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgccagaacctgctgttctcggccacgttctcccaggacatcaccgcc
ctggccggcaagctgttgcacaacccggagcgcatcgaagtcacgccgccgaataccacg
gtcgagcgtatcgagcaacgcgtcttccgcctggccgccagccacaagcgtgcgctgctg
gcgcacctgatcaccgcaggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggctgatttcaaggccggctcggtg
cgcatcctggtggccaccgatatcgccgctcgcggcctggatatcgaccaactgccgcac
gtggtcaacttcgagctgccgaacgtcgatgaagactacgtacaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggccatctccctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttc
gatgccagcgccgtggaggccgaaaagccagaagcgcgcgagcgcccggacgtgcgcaac
ccacgcaacccacgcggtccgaagggcgatggcccgaacggcggcgggggtggcggtggt
cgtcgcgacaagggcaaggacaagggcaaggaaaaatccgccaccagcggccgtggcgaa
cgcccggcccgtgagcagaagccccgcgaaggcaccccggcccgcgaacagcgccagccg
agccagccgccacgcgctgctgccgaccgtgctccggacgagttcctcgacgacgatgtg
gataacttcggtaaccgcgttgactacgtgccccaggccaaaccggcccaaggccgtggc
cgtcgccctggtgctccggcgcaaggcgcgggtgcaggcgctccacgtggaggccagcca
cagggcggccgtcagaatggccctcgcaacagcagcggcggtaccaccggtacgccgcct
gccaagcgcaatggcccgcgcaatggcgcaccccgtgacggccaggcccgtcgcgaagac
tcgcgcaacaacaaccgccgcccggcccgtgacgaccagcctcgcttgtccgaaccggct
gtgcagaacccgcgcggtggcccggcgccgaagatcatccacaaggagtcgaaagtagat
cgcttcccgacaccggagcaactggatcagttgccaggccgtcctcgtggtgaaaagcca
gcgctgctgacacgcaatcgctga
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