Pseudomonas extremorientalis: LUU92_27715
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Entry
LUU92_27715 CDS
T11956
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pext Pseudomonas extremorientalis
Pathway
pext03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pext00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LUU92_27715 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pext03021
]
LUU92_27715 (rho)
03019 Messenger RNA biogenesis [BR:
pext03019
]
LUU92_27715 (rho)
Transcription machinery [BR:
pext03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LUU92_27715 (rho)
Messenger RNA biogenesis [BR:
pext03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LUU92_27715 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UUN88578
LinkDB
All DBs
Position
complement(6099384..6100643)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccaattggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgctgacgcgtcctatctcgccggcccagacgatatctac
gtctcgccaagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgcccaccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacctgaccggccgt
gtgatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgtcgccccgccg
aaagccggtaagaccatcatgctgcagaacattgccgcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtgctgctgatcgatgagcgtccggaagaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggtgccgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcactg
gttgaaaccggttcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgccactggatcgtcgcatcgcggaaaaacgcgtgttcccggcgatcaacatc
aaccgttccggcacccgccgcgaagagttgctgaccgctgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtagccgccatcgagttcctggtc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaagcgtaagtaa
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