Pantoea eucalypti: EE896_12145
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Entry
EE896_12145 CDS
T06282
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pey
Pantoea eucalypti
Pathway
pey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EE896_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pey03019
]
EE896_12145
03009 Ribosome biogenesis [BR:
pey03009
]
EE896_12145
Enzymes [BR:
pey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EE896_12145
Messenger RNA biogenesis [BR:
pey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EE896_12145
Ribosome biogenesis [BR:
pey03009
]
Prokaryotic type
rRNA processing factors
EE896_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QGF27534
LinkDB
All DBs
Position
2600354..2603806
Genome browser
AA seq
1150 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDLPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEAQRAEAQPAAKAKPAVAAPATASTGFFGRLLGGLKKMFASEEAPAAKPVTAEV
AEPQKAPEGEQENNNGRGERRSNNNNRRNNNRRERTPRNGDNAQSREGREPRESREPRES
REPRESREPRENREPREGNNNNRRNKRESQSGEVREERPALSEEARQQRDEQQQQRREQR
AERQRRRQEEKRAGEEAAKVAEQPAVVAEAPDATEVQDDERVQVMPRRKPRQLNQKVRVD
DNRQPMPAEASDFVQPAEVRQPQPAEVAQPQPEFQAQQSDEQDDSDNRDNANMPRRSRRS
PRHLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQVQNVTH
QTPAYSAEETAVATHALPVAAAVESGVQDAPVQHAEPQAETPVPVVNTDDTRAIDAPVDE
QPSVVPAADEVKADAVAAEAVPAEPVTEAPVMTPAVETVQPAEVAQSSEVEQPADVTEQS
ATDVSEEIAAEVEEVLNAPVAAEAETAPVREPHAPVAARDIAPAEPVKATEPAVSLPADA
SVPAAAAVPNDGTRWKHFASAPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGAHSAT
HQATAPATKP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcacgcgcattgaacccagccttgaagctgcgtttgtcgattac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatctcccgcgaatacttcccctcc
agctataacgcgcatggtcgtccgaatattaaagacgtactgcgtgaagggcaggaagtt
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctgaccacctttatc
tctctggcgggcagctacctggtcctgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgaccgtaccgaattaaaagaagcgctgtcggcgcttgacctg
ccggaaggcatgggactgattgtccgcaccgccggcgtcggcaaatcggccgaatcgctg
cagtgggatttaagcttccgtcttaagcattgggaagcgatcaagaaagccgctgaaaac
cgtcctgctccgttcctgatccatcaggagagtaacgtgattgtccgcgctttccgcgac
tatctgcgtcaggacatcggtgaaatccttatcgataatcctaaagttctggaactggca
cgtcagcatattgctgcgctgggccgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccattatcagattgagtcgcaaatcgaatccgctttccag
cgtgaagtccgcctgccttccggtggctcgattgtcatcgacagcactgaagcgctgacc
gcgatcgatatcaactcagcacgcgcaacgcgcggcggtgacatcgaagagacggcgttc
aacactaaccttgaagccgctgacgagatcgcccgtcagctgcgcctgcgtgacctgggc
ggcctgatcgttatcgactatatcgatatgacgccggtacgccatcagcgcgcagttgaa
aaccgtcttcgcgaagctgttcgtcaggaccgcgcccgtattcagatcagccacatttcg
cgtttcggcctgctggagatgtcccgtcagcgcctgagcccatcattaggtgaatccagt
catcacgtttgcccacgctgtagcggcaccggcaccatccgtgataacgagtcacttgct
ttgtcgattctgcgtctgattgaagaagaagcactgaaagacaacaccaaagaagttcac
gctattgttccggttcaggttgcctcctacctgctgaacgaaaaacgtgaagcggtcaac
gcgattgaaaaacgccagggcggcgtgcgggcaatcatcgttcctgatgacaagatgcag
accccgcactactccgtgctgcgcgtacgtaaaggcgaagagacccagaccctgagctat
catctgccgaagctgcacgaagccgaaatggcgatgccgtcggaagaagagcatgcagag
cgtcgtcgtcctgagcagcctgctctggccgcgtttgtgatgcctgatgcaccgccggct
ccggtagaagttgagccggaagcgcagcgtgctgaagctcagccagcggcaaaagctaaa
cctgcggtggctgcacctgcgacggccagcaccggtttcttcgggcgtctgcttggcggc
ctgaaaaaaatgtttgccagcgaggaagcccctgctgctaaacctgtgaccgctgaggtt
gctgaaccgcaaaaagcgcctgaaggtgagcaggaaaacaacaacggtcgtggcgaacga
cgcagcaacaataacaaccgtcgcaataacaatcgtcgtgagcgtacgccgcgtaacggg
gataacgcacagtcgcgtgagggccgtgagcctcgcgaaagtcgtgaaccgcgtgagagc
cgtgaaccgcgcgaaagccgcgagccacgtgaaaatcgtgagccgcgcgagggcaataat
aacaaccgccgcaacaagcgtgagtctcagtcaggtgaagtacgcgaagagcgtccggca
ttgagcgaagaagcgcgccagcagcgtgatgagcagcagcaacagcgccgtgaacagcgc
gctgaacgtcagcgtcgtcgtcaggaagagaaacgcgccggtgaagaagccgccaaagta
gctgagcagccagcagtggtcgcagaagccccggacgcgaccgaggtgcaggatgatgag
cgcgtacaggttatgccgcgtcgtaagccgcgtcagctgaaccagaaggtgcgtgttgat
gataatcgtcaacctatgccagccgaagccagcgactttgtccagcctgccgaagtgcgt
cagcctcagccagctgaagttgcacagccgcagcctgagttccaggcccagcagagtgac
gaacaggatgacagcgacaaccgtgataacgccaatatgccacgtcgctcacgtcgttcg
ccacgccatctgcgtgtgagcggacagcgtcgtcgtcgttaccgtgatgagcgttacccg
acgcagtcagccatgcctctggccgcagcagcagcgtctcccgagatggcctctggtaaa
gtctggattcgctatccggtgagccaggccagcgaagagcaggtgcagaatgtgacacac
cagacacccgcgtacagcgcggaagaaacagcagtggctacccatgccctgcccgtggct
gccgctgtggaatcgggtgtgcaggacgcgccagtgcagcatgctgagccgcaggcagaa
acgccagtgccggtcgtcaacactgatgatacccgtgctattgacgccccggttgacgaa
cagccttctgtggttccagctgccgatgaagtgaaagcagacgctgtcgcggctgaagcc
gtgcctgctgaacccgtcactgaagcgccggttatgacacctgctgttgagacggtacag
cctgcagaggttgcacaatcatcagaggttgaacagcctgcggacgttactgagcagtca
gccactgatgtcagtgaagagatcgcagccgaggttgaagaagtgctgaatgcgccagtc
gcagcagaggctgaaacagcaccggttcgtgaacctcatgctccggttgctgcacgtgat
atcgcgccagcggaacctgtgaaggcgaccgaacctgcagtgtcattgcctgccgacgca
tctgtgccagcagctgcagctgtaccgaacgacggtacacgctggaagcattttgcttct
gcgccaatgaccaaagcgcctgcgccagtctggcagtcagaaccggctccgcacagtgat
tgggtgcgtgcaccgtatgagttcgacggtcgcggttctgcaggagcgcatagcgccacc
catcaggccactgcaccggcaaccaagccgtaa
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