Pseudomonas eucalypticola: HWQ56_16745
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Entry
HWQ56_16745 CDS
T07251
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pez
Pseudomonas eucalypticola
Pathway
pez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HWQ56_16745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pez03400
]
HWQ56_16745 (ligD)
Enzymes [BR:
pez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HWQ56_16745 (ligD)
DNA repair and recombination proteins [BR:
pez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HWQ56_16745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
QKZ05349
UniProt:
A0A7D5H6N0
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All DBs
Position
3775147..3777669
Genome browser
AA seq
840 aa
AA seq
DB search
MARSLKEYHSKRNFDATPEPSGKGGQRGKAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGGGDVIVWDRGVWIPEGNPQQS
YEKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWLLIKSADGEARPEAEFDIVAALPDSVL
SDRTLAPKARQSTKAAKAPAKPKAKTKPQSLSGARKATLPATLTPELATLVESAPSGDWR
YEVKFDGYRVLARIDGDEVRLFTRNGNDWTAKMPSQANALAGLGVQSAWLDGEMVVARED
GVSDFQALQNAFDDGRDEAIVYYLFDALYLNGLDLRQCPLQERRAALEALLAPSEAAQLR
YSADFDEPVQSLLDSACRMGMEGLIGKRADSLYSGKRSSDWVKLKCQQRQEFVIVGYTDP
KGSRSGFGALLLALHDRDSGELRFAGKVGTGFNTATLASILQKLEPLQVPKPQFSRPPTG
AQARDVHWLKPVLLAEVAYAQMTRDGVVRHSVFHGLRDDKPAKAIDLEQPVNTSKATPRK
ATPGKAKTSASRESLRLTHPDRVIDASCGATKRQVAEYYTQVAAWIEPHLKRRPVALVRA
PEGLAGELFFQKNAAHLDIPGLVTDEAAGQTVMIINRPDALLGAVQMNTLELHTWNATDQ
NYDKPDRFILDLDPDPALPWKSMLEATQLTLTLLDELGLNAFLKTSGGKGMHIVVPLTRR
AGWDEVKDFAHAIVKHLAGLFPDRLTSVSGPKNRVGKIFIDYLRNTKGATTACAYTLRAR
EGLPVSVPIRRDELSELKGANQWTLFNLHERLADSDDPWADYGATKQSITAALRDRLGGD
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcccgttccctgaaggaataccacagcaagcgcaacttcgacgccacccccgaaccc
agcggcaagggcggccagcggggcaaagcccatgcgctgcagtactgtatccagaaacac
gatgccagccacctgcactacgactttcgcctggaactggatggcacgctgaagagctgg
gccatccccaagggcccgtcgctggaccccaaggtgcggcgcctggcggtgcacgtggaa
gaccacccactcgattacgccaatttcgagggccatattcccgagggccactacggcggc
ggtgatgtcatcgtctgggaccgtggcgtgtggatccccgaaggcaacccccagcaaagc
tatgaaaaaggcaagctgcgcttccgcctgcagggggaaaagctgtccggtatctggaac
ctgtttcgcacccaccttgcaggcaagaaggaacaatggctgctgatcaagtccgccgac
ggcgaagcccgccccgaggcggagttcgacattgtcgcggcactgcccgacagcgtcctc
agcgaccgtaccctggcgcccaaggcccggcaatcgacgaaggccgccaaggccccggcc
aagcccaaggcgaaaaccaaaccccagtccctgagtggcgcgcgcaaggccaccctgccc
gctaccctcacgccggagctggccacgctggtcgagtccgcccccagcggcgactggcgc
tacgaggtcaagttcgacggctaccgggtgctggcgcgcatcgacggcgacgaggtgcgc
ctgtttacccgcaacggcaacgactggacggcgaaaatgcccagccaggccaatgccctc
gccgggctaggggtacagtcagcctggctggacggcgaaatggtggtggcccgggaagat
ggcgtctcagacttccaggcgttgcaaaatgccttcgatgacggccgcgacgaggccatc
gtttattacctgttcgacgccctgtacctcaatggcctggacctgcgccagtgtcccctg
caggagcgtcgcgcggccctggaggccctgctggcgcccagcgaggcagcgcaactgcgc
tattcggccgatttcgacgaaccggtccaatccctgctcgacagcgcctgccgcatgggc
atggagggcctgatcggcaagcgcgccgacagcctgtacagcggcaaacgcagcagtgac
tgggtcaagctcaagtgccagcaacgccaggaattcgtgattgtcggttacaccgacccc
aagggcagccgcagcggtttcggcgcgctgctgctggccttgcacgaccgtgacagcggc
gagctgcgcttcgccggcaaggtgggcaccggcttcaacaccgcgaccctggccagcatt
ctgcagaaactcgagcccctgcaagtgcccaaacctcagttcagccgcccccccaccggc
gcccaggcccgtgacgtgcactggctcaagcccgtcctgttggcggaagtcgcctacgcc
caaatgacccgcgacggcgtggtccgccactcggtcttccacggcctgcgcgatgacaag
ccggccaaggccatcgacctggagcaacccgtgaacaccagcaaggcaaccccccgtaaa
gccacccccggcaaagccaagaccagcgccagccgcgaaagcctgcgcctgacccaccct
gaccgcgtcatcgatgccagctgcggcgccaccaagcgtcaggtcgccgagtactacacc
caagtggcggcctggatcgagccgcacctcaagcggcgcccggtggcgctggtgcgggcc
ccggagggtctggccggtgaactgtttttccagaaaaacgccgcgcacctggacatcccc
gggctggtcaccgacgaggccgccgggcagaccgtgatgatcatcaaccgccccgacgcg
ttgctcggcgcggtgcagatgaacaccctggagctgcacacctggaacgccacagaccag
aactacgacaaacccgaccgctttatcctggacctggaccccgaccccgccctgccgtgg
aaaagcatgctcgaagccacacaactgaccttgaccttgctcgacgagctgggcctgaac
gccttcctcaagaccagtggcggcaagggcatgcacattgtcgtgccgctgacccggcgc
gcgggctgggacgaagtgaaggacttcgcccacgccatcgtcaagcacctggcaggcttg
ttccccgaccgcctgacctcggtgtccgggcccaagaaccgcgtgggcaagatcttcatc
gactacctgcgcaacaccaagggcgctaccacggcctgtgcctacacgcttcgcgctcgc
gagggcctgccggtatcggtgcccattcgccgcgacgagctgagcgagctcaagggtgcc
aaccagtggaccctcttcaacctgcacgaacgcctggcggacagcgacgatccctgggcc
gactacggggcgaccaagcagtccatcaccgccgccctgcgcgaccgccttgggggtgac
tga
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