KEGG   Pseudomonas eucalypticola: HWQ56_16745
Entry
HWQ56_16745       CDS       T07251                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pez  Pseudomonas eucalypticola
Pathway
pez03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pez00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HWQ56_16745 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pez03400]
    HWQ56_16745 (ligD)
Enzymes [BR:pez01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HWQ56_16745 (ligD)
DNA repair and recombination proteins [BR:pez03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HWQ56_16745 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase Tudor_3
Other DBs
NCBI-ProteinID: QKZ05349
UniProt: A0A7D5H6N0
LinkDB
Position
3775147..3777669
AA seq 840 aa
MARSLKEYHSKRNFDATPEPSGKGGQRGKAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGGGDVIVWDRGVWIPEGNPQQS
YEKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWLLIKSADGEARPEAEFDIVAALPDSVL
SDRTLAPKARQSTKAAKAPAKPKAKTKPQSLSGARKATLPATLTPELATLVESAPSGDWR
YEVKFDGYRVLARIDGDEVRLFTRNGNDWTAKMPSQANALAGLGVQSAWLDGEMVVARED
GVSDFQALQNAFDDGRDEAIVYYLFDALYLNGLDLRQCPLQERRAALEALLAPSEAAQLR
YSADFDEPVQSLLDSACRMGMEGLIGKRADSLYSGKRSSDWVKLKCQQRQEFVIVGYTDP
KGSRSGFGALLLALHDRDSGELRFAGKVGTGFNTATLASILQKLEPLQVPKPQFSRPPTG
AQARDVHWLKPVLLAEVAYAQMTRDGVVRHSVFHGLRDDKPAKAIDLEQPVNTSKATPRK
ATPGKAKTSASRESLRLTHPDRVIDASCGATKRQVAEYYTQVAAWIEPHLKRRPVALVRA
PEGLAGELFFQKNAAHLDIPGLVTDEAAGQTVMIINRPDALLGAVQMNTLELHTWNATDQ
NYDKPDRFILDLDPDPALPWKSMLEATQLTLTLLDELGLNAFLKTSGGKGMHIVVPLTRR
AGWDEVKDFAHAIVKHLAGLFPDRLTSVSGPKNRVGKIFIDYLRNTKGATTACAYTLRAR
EGLPVSVPIRRDELSELKGANQWTLFNLHERLADSDDPWADYGATKQSITAALRDRLGGD
NT seq 2523 nt   +upstreamnt  +downstreamnt
atggcccgttccctgaaggaataccacagcaagcgcaacttcgacgccacccccgaaccc
agcggcaagggcggccagcggggcaaagcccatgcgctgcagtactgtatccagaaacac
gatgccagccacctgcactacgactttcgcctggaactggatggcacgctgaagagctgg
gccatccccaagggcccgtcgctggaccccaaggtgcggcgcctggcggtgcacgtggaa
gaccacccactcgattacgccaatttcgagggccatattcccgagggccactacggcggc
ggtgatgtcatcgtctgggaccgtggcgtgtggatccccgaaggcaacccccagcaaagc
tatgaaaaaggcaagctgcgcttccgcctgcagggggaaaagctgtccggtatctggaac
ctgtttcgcacccaccttgcaggcaagaaggaacaatggctgctgatcaagtccgccgac
ggcgaagcccgccccgaggcggagttcgacattgtcgcggcactgcccgacagcgtcctc
agcgaccgtaccctggcgcccaaggcccggcaatcgacgaaggccgccaaggccccggcc
aagcccaaggcgaaaaccaaaccccagtccctgagtggcgcgcgcaaggccaccctgccc
gctaccctcacgccggagctggccacgctggtcgagtccgcccccagcggcgactggcgc
tacgaggtcaagttcgacggctaccgggtgctggcgcgcatcgacggcgacgaggtgcgc
ctgtttacccgcaacggcaacgactggacggcgaaaatgcccagccaggccaatgccctc
gccgggctaggggtacagtcagcctggctggacggcgaaatggtggtggcccgggaagat
ggcgtctcagacttccaggcgttgcaaaatgccttcgatgacggccgcgacgaggccatc
gtttattacctgttcgacgccctgtacctcaatggcctggacctgcgccagtgtcccctg
caggagcgtcgcgcggccctggaggccctgctggcgcccagcgaggcagcgcaactgcgc
tattcggccgatttcgacgaaccggtccaatccctgctcgacagcgcctgccgcatgggc
atggagggcctgatcggcaagcgcgccgacagcctgtacagcggcaaacgcagcagtgac
tgggtcaagctcaagtgccagcaacgccaggaattcgtgattgtcggttacaccgacccc
aagggcagccgcagcggtttcggcgcgctgctgctggccttgcacgaccgtgacagcggc
gagctgcgcttcgccggcaaggtgggcaccggcttcaacaccgcgaccctggccagcatt
ctgcagaaactcgagcccctgcaagtgcccaaacctcagttcagccgcccccccaccggc
gcccaggcccgtgacgtgcactggctcaagcccgtcctgttggcggaagtcgcctacgcc
caaatgacccgcgacggcgtggtccgccactcggtcttccacggcctgcgcgatgacaag
ccggccaaggccatcgacctggagcaacccgtgaacaccagcaaggcaaccccccgtaaa
gccacccccggcaaagccaagaccagcgccagccgcgaaagcctgcgcctgacccaccct
gaccgcgtcatcgatgccagctgcggcgccaccaagcgtcaggtcgccgagtactacacc
caagtggcggcctggatcgagccgcacctcaagcggcgcccggtggcgctggtgcgggcc
ccggagggtctggccggtgaactgtttttccagaaaaacgccgcgcacctggacatcccc
gggctggtcaccgacgaggccgccgggcagaccgtgatgatcatcaaccgccccgacgcg
ttgctcggcgcggtgcagatgaacaccctggagctgcacacctggaacgccacagaccag
aactacgacaaacccgaccgctttatcctggacctggaccccgaccccgccctgccgtgg
aaaagcatgctcgaagccacacaactgaccttgaccttgctcgacgagctgggcctgaac
gccttcctcaagaccagtggcggcaagggcatgcacattgtcgtgccgctgacccggcgc
gcgggctgggacgaagtgaaggacttcgcccacgccatcgtcaagcacctggcaggcttg
ttccccgaccgcctgacctcggtgtccgggcccaagaaccgcgtgggcaagatcttcatc
gactacctgcgcaacaccaagggcgctaccacggcctgtgcctacacgcttcgcgctcgc
gagggcctgccggtatcggtgcccattcgccgcgacgagctgagcgagctcaagggtgcc
aaccagtggaccctcttcaacctgcacgaacgcctggcggacagcgacgatccctgggcc
gactacggggcgaccaagcagtccatcaccgccgccctgcgcgaccgccttgggggtgac
tga

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