Pseudomonas eucalypticola: HWQ56_20715
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Entry
HWQ56_20715 CDS
T07251
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pez
Pseudomonas eucalypticola
Pathway
pez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ56_20715 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pez03019
]
HWQ56_20715 (rne)
03009 Ribosome biogenesis [BR:
pez03009
]
HWQ56_20715 (rne)
Enzymes [BR:
pez01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HWQ56_20715 (rne)
Messenger RNA biogenesis [BR:
pez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWQ56_20715 (rne)
Ribosome biogenesis [BR:
pez03009
]
Prokaryotic type
rRNA processing factors
HWQ56_20715 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QKZ06070
UniProt:
A0A7D5HFA6
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All DBs
Position
4665579..4668908
Genome browser
AA seq
1109 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAQTNQSSYEIAAAEAEEAQPVAATRTLVRQEAAVKTAPARANAPVPVEV
AAAPVAAPAPAPVVPEPSLFKGLVKSLVSLFATKEEPVAPAVVEKPATPERPQRNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREAREEAPAAREERAPRPPREPRAPREDRR
SREDRPVRELREPLDAVAPAVREERPERAPREERAPREERAPREERAPREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERAPRERTLRPEVENEAAEAAAVADEAL
PNEELLQDENQEGAEGERPRRRSRGQRRRSNRRERQRDANGNVVEGSEEGQEEGSEPSTN
ELAAGLAVTAAVASTVISAPAEAQAAAQAERANASVAEAAPAAPEAVDAPVAEAAPTPAE
EAAPAVHAEVVADEPVVVTPVFETPAAEAPVEVTPVVEAAQVAEPVIEPLVEPAPAAEAA
PVVEAQPEPQVFAAPVVEQPAPVFEAPAPKTVEEAAAPVVDIQPEPTPEPVKAEAVEAAP
APVVEPAAEPAAPAAEPVVEAKPEEAPAPAAEAPAVVLTSNGRAPNDPREVRRRKREAEA
AAAAAAAAEAAVEHKPHAVEEQHEHKPFV
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagac
ggccagcgcctctacgacctggacatcgagtccggtgcacgcgagcagaagaaggccaat
atctacaaaggccgcatcactcgcatcgaacccagcctggaagcggccttcgtcgacttt
ggctccgagcgccatggcttcctgccactcaaagaaatctcccgcgaatacttcaagaaa
tcgcctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagtctg
gccggccgttacctggtgctgatgcccaacaaccctcgcgccggcggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaattgcgtgaagcgctgaacggcctggtcgccccggcc
gacatgggcctgatcgttcgcaccgcgggcctgggccgcagcagcgaagagatgcagtgg
gacctggactacctgctgcaactgtggaccgcgatcaaggaagcttccctggaccgttcc
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgaagcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccgtccggcggctcgatcgtcatcgacccgactgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggtagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcttgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaacgtgtc
cgcgaatgcctggaagccgaccgtgcccgcgtgcagatcggccgcatttcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccttcgctgggcgaaagcagcggcatcgtc
tgcccgcgctgcagcggtaccggcatcatccgtgacgtggagtccctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgtaccgccgaggttcgcgcccaggtg
ccgattccggtcgcggccttcctgctgaacgagaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgctcgcatcgtcattctgccgaacgaccacctggaaacgccgcacttc
gaagtgcagcgcctgcgtgacgacagccctgaagcccagaccaaccagtcgagctacgag
atcgccgcggccgaagccgaagaagcccaacctgtcgccgccactcgcaccctggttcgc
caggaagcagccgtgaagacggccccggcccgcgccaacgccccggtcccggtggaagta
gccgccgccccggttgccgcgcctgcacctgccccggtcgtgcctgagccaagcctgttc
aaaggcctggtgaagtcgctggtcagcctgttcgccaccaaggaagagccagtagcgcct
gccgtggtcgagaagccagccacccccgagcgcccacagcgcaacgaggagcgtcgcaac
ggtcgccagcagagccgcaaccgcaacggccgccgcgacgaagagcgcaagccgcgcgaa
gaacgcgccccacgtgaagagcgcgccccacgcgaagcccgcgaggaggccccggccgcc
cgcgaagaacgcgccccgcgcccaccacgcgagccgcgcgccccgcgtgaagaccgtcgc
agccgtgaagaccgccccgttcgcgaactgcgcgagccgctggacgccgtggccccggcc
gtacgcgaagagcgcccggagcgcgccccacgtgaggaacgtgcgcctcgcgaagagcgt
gccccgcgtgaagaacgcgctccacgcgaagaacgtgcgcctcgtgaagaacgcgcccca
cgcgaagaacgtgcgcctcgtgaagagcgcgctccacgcgaagaacgtgcccctcgtgaa
gaacgcgccccacgcgaagagcgtgcgcctcgtgaagaacgtgctccacgcgaacgtacg
ctgcgtccggaagtagagaacgaagcagctgaagccgccgccgttgccgacgaagcgttg
ccaaatgaagaactgctgcaggatgagaaccaggaaggcgccgaaggcgaacgccctcgt
cgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgcgatgccaac
ggcaacgtcgtggaaggtagcgaagaaggccaggaagaaggcagcgagccatcgaccaac
gaactggctgccggcctggcggtcaccgccgctgtcgccagcaccgtgatcagtgctccg
gctgaagcccaggcggcagcccaggctgaacgcgccaacgccagcgtcgcggaagccgca
cctgccgctcctgaagcagtagacgctccggttgccgaagccgcgccgacccctgccgaa
gaagccgcgccagccgttcacgccgaagtcgtcgctgacgagcctgtggtcgtgaccccg
gtgttcgaaaccccggccgccgaagccccggtcgaagtgaccccggttgtagaggccgcc
caggtcgccgagccggtgatcgagccgctggttgagcctgccccggccgctgaagcagcc
ccggtggttgaagcccagccagagccgcaggtgttcgccgcgccagtggtcgagcaaccc
gcccctgtgttcgaagcgcctgcgccgaagaccgtcgaggaagcggccgcccccgtggtc
gacatccagccggagccaacgcctgagccggtgaaagccgaggccgtcgaagccgcgcca
gcccctgtggtcgagcctgctgccgagccagcagccccggccgccgagccagtggttgaa
gccaagcctgaagaagcgccagcgccagccgccgaagcaccggccgtggtcctgaccagc
aatggtcgcgccccgaacgacccgcgtgaagtgcgtcgccgcaagcgtgaagctgaagcc
gccgcggctgctgcggctgccgccgaagccgcggttgagcacaagccgcacgccgtagaa
gaacagcacgagcacaagccgttcgtctga
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