Pseudomonas eucalypticola: HWQ56_20975
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Entry
HWQ56_20975 CDS
T07251
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pez
Pseudomonas eucalypticola
Pathway
pez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ56_20975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pez03019
]
HWQ56_20975
03009 Ribosome biogenesis [BR:
pez03009
]
HWQ56_20975
Enzymes [BR:
pez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HWQ56_20975
Messenger RNA biogenesis [BR:
pez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWQ56_20975
Ribosome biogenesis [BR:
pez03009
]
Prokaryotic type
rRNA helicases
HWQ56_20975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QKZ06113
UniProt:
A0A7D5D963
LinkDB
All DBs
Position
complement(4726225..4727889)
Genome browser
AA seq
554 aa
AA seq
DB search
MTQETGGFAALGLNPNIVAAVIATGYEEPSAIQQQSIPIILEGHDMIGQAQTGTGKTAAF
ALPILNRIDPSKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQAVLDARIKKLTNGLAPLVGDAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLEAVEREQPLVPTSAPRERTGGDRPERGDRERRAPMPLGEGRARC
RTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLEKLLAKLKDTR
VAGKQLKLRRYRED
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcggacttaacccgaatattgttgcagcc
gtcatcgcgaccggctacgaagagccgtcggctattcagcagcaatcgatcccaatcatc
ctggaaggtcatgacatgatcggccaggcgcagacaggtaccggtaagaccgctgccttc
gcactgccgattctgaatcgcatcgacccgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccactgcattcgaaacctactccaagcag
atgcctggcgtaaccgtagtggccgtgtatggcggtgccccgatgggcccgcaattgaaa
gctatccgtaacggcgcgcaaatcgtcgtggctacccctggccgtctgtgcgaccacctg
cgtcgcgacgagaaggtcctggcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtcatcttcaaggccatgcctgaaagc
cgtcagaccgtactgttctcggctaccctgccgcagtccatccgtgcgatcgccgagcgt
cacctgaaagacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgccgaccagaagacttctgctgtcctgcgcctgctg
gaagtggaagagttcgacgctttgatcgccttcgtgcgtaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaggctgccgccctgaacggcgacattgcc
cagaaccagcgtgagcgcgtcatcgactcgctgaaggatggccgcctggacatcgtcgtc
gcgaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgacccggaatcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggccgcgccctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgtgtgaccggtcagaaggttgccgaagttcgcctgccgaacgcccaggccgtgctg
gatgcccgtatcaagaagttgaccaacggcctggcgccactggtcggtgatgcggaagcg
acccatggcgacctgctggaccgcctgacggccgacatcggttgctcgccgcgtgcgctg
gccgccgccctgctgcgcaaggccaccaatggccaggcgctaaccctggaagccgtagag
cgtgagcagccactggttccgaccagcgcgccacgtgagcgtaccggtggtgaccgtcct
gagcgtggcgaccgcgagcgtcgcgcgccaatgcctctgggcgaaggccgtgcccgctgc
cgtaccgccctgggcgctcgcgacggcatcgccgcgaagaacctgctgggtgccatcctc
aatgaaggcggcctggcccgcgaagccatcggccgtatccaggtacgcgacagcttcagc
ctggtcgaactgcctgaggaaggcctggagaagctgctggccaagctcaaggacactcgc
gttgccggcaagcagctcaagctgcgtcgttatcgcgaagactga
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