Pseudomonas eucalypticola: HWQ56_25920
Help
Entry
HWQ56_25920 CDS
T07251
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pez
Pseudomonas eucalypticola
Pathway
pez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HWQ56_25920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pez03021
]
HWQ56_25920 (rpoC)
03400 DNA repair and recombination proteins [BR:
pez03400
]
HWQ56_25920 (rpoC)
Enzymes [BR:
pez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HWQ56_25920 (rpoC)
Transcription machinery [BR:
pez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HWQ56_25920 (rpoC)
DNA repair and recombination proteins [BR:
pez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HWQ56_25920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QKZ07029
UniProt:
A0A7D5H8S4
LinkDB
All DBs
Position
complement(5774890..5779089)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSFDVVNTPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGVVRL
HNLKHVERADGNLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGVQVGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLGENERLASEDKFISKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagtttgacgcaatc
cgtatcgggttggcgtcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgacccgggcatgaccaccctggagaagggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgccattgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagttgatggaagccttccagggctccggcaacctgcctgagtggatggtgttgacc
gttctgccggttctgccgccagacctgcgtccactggttccactggatggcggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctggacctgtcggcccctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagctgtcgacgccttgctggacaacggtcgtcgcggtcgcgccatcacgggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgcctgcaccagtgcggtcttccgaagaagatggccctggagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggtctcgctaccaccatcaaggccgccaagaagatg
gtcgagcgcgaactgccagaggtatgggacgttctcgccgaagtgatccgcgaacacccc
gtgctgctcaaccgtgcaccgacgcttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggcaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggcggtacacgtaccgctgaccctggaagcccagctcgaagcc
cgtgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgcgaagcgatcaacgcc
aagggcgaaggccgcgtgtttgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcagcgctgcacgccaagatcaaagtgcgcatcaacgaaacggtcaacgaccgtgac
ggcggcagcgtgaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggtcgttccgccaggcctgtccttcgacgtggtcaacacgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gctgaccagttgatgtacaccggtttcgcctactcgacgatttcgggtgtttccatcggt
gttaacgacttcgttatcccggatgagaaagctcgcatcatcggtaccgctaccgacgaa
gtgaaagagatcgaaagccagtacgcttccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtgtccaaggcgatgatgtccaac
ctctcgaaagagaaggtcatcgatcgtcatggcaacgaagttgaccaggaatcgttcaac
tcgatgtacatgatggctgactccggtgcccggggttcggcagctcagattcgtcagctg
gctggtatgcgtggtctgatggccaagccggacggctcgatcatcgagaccccgatcacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgctaactccggttacctgacgcgtcgtctg
gtagacgtggcgcaagacttggtggttaccgagatcgactgcggcaccgagcagggtctg
ctgatgaccccgcacatcgaaggcggcgacgttgtagagccgctgggtgagcgcgtactg
ggccgtgtcatcgcccgtgacgtgttcaagccaggtaccgacgacgtcatcgttccggcc
ggcaccctggtagacgagaagtgggtagagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgtgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggtggtgtggttcgtctg
cacaacctgaaacacgttgagcgtgccgatggcaacctggttgccgtgtcccgttccggt
gagctggccatcgccgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gctgtgatctcggtgaaggaaggcgacaaggtcgacgctggtgccatcgtggccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggtatcacgatcaagcgccagaccgacgaactgaccggtctgaccaacatcgaa
gtactggatgtcaaagatcgtcctgcggcgggcaaggaaattcgccctgcggtcaagatg
gttggtgtggatggcaaggatctgctgctgccaggtaccgacgtaccggctcagtacttc
ctgccagccaacgccctggtcggcgtggcggatggtgtgcaagtgggtgtgggtgacgtt
atcgcccgtattccacaggaaacctccaagacccgtgacatcaccggtggtctgccacgc
gttgccgatttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaggagaccaagggcaagcgccgtctggtcattaccccgaac
gacggcagcgatccttacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggtgaacaggtcaaccgcggtgaggtaatctccgacggtcctagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctcgccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcgccgagtcgggtgactccagcttcatcaagggcgaccagatg
gaactgactcaggtactgggcgagaacgagcgcctggcatcggaagacaagttcatctcc
aagtacacccgtgtgctgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggctggt
accggtctggcataccacagcgagcgcaagcgtcgccgtgatgctgacaaaccgttgcgt
gtaagcgcgagcgaagtcgaagcagcactgactgaagcgctgaactccagcggtaactga
DBGET
integrated database retrieval system
