Paenibacillus sp. E222: HW560_01415
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Entry
HW560_01415 CDS
T10443
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pezz Paenibacillus sp. E222
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pezz03009
]
HW560_01415 (rlmD)
Enzymes [BR:
pezz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HW560_01415 (rlmD)
Ribosome biogenesis [BR:
pezz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HW560_01415 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
TRM5-TYW2_MTfase
PrmA
Cons_hypoth95
Methyltransf_11
Methyltransf_12
N6_Mtase
Methyltransf_23
OST-HTH
RrnaAD
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QLG42564
LinkDB
All DBs
Position
complement(330793..332541)
Genome browser
AA seq
582 aa
AA seq
DB search
MNIYEERSECTLSNTNRSGRGKNRRNSAASQGQGNASVSRQPSQTSRPSTRQQGKEVRPQ
GASLSAVRPKERARESAPIEGLPVSKNEETVIDIIGMNHDGEGVGRANGYTLFVQGALPG
ETVRVRVMKTKKQYGYAKLLEIVKASPDRVSAPCPIYDQCGGCQIQHMSYAGQLAWKRQL
VVDNLQRIGKLNVLVEDTGEKNADQAAEPAISEEQVNGSNRIRLRLEGVMNEEAAAQGIR
VLPTMGMDEPWRYRNKAQVPIGAAEGGLVGGFYAKGSHRIIDMDTCLIQHEHNDEVVAKV
KELGSHLGISAYNEETGRGLLRHVVVKKAFRTGEMMLVLVTNGRDIPYKDEWIGSIREAI
PHVASICQNVNKKQTNVIFGDETRVLWGRDVIYDYIGDVQFAISARSFYQVNPVQTEVLY
GKTVEYAGLSGKETVIDAYCGIGTISLFLAQHADQVYGVEIVPEAIEDARSNAMLNDMKN
VKFEVGASEDVIPRWKEQGIEADVIVVDPPRKGCDPRLLDTILEMKPERVVYVSCNPSTL
ARDLRVLEDGGYRTVEVTPVDMFPHTVHVESVAMLVRNGTEG
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaacatatatgaagaaagaagtgaatgtacgttgtctaatacgaaccgcagcggtcgt
ggaaaaaaccgccggaattcggctgcctctcaggggcaagggaatgcttcagtgtcccgt
cagccaagtcaaacatctcgtccatctacacgtcagcaaggaaaagaggtgcggccacaa
ggcgcatctctttctgccgttcgtccaaaggagagagcgcgtgaatctgcaccaatcgaa
gggctgcccgttagtaaaaatgaagaaaccgtcatcgatatcattggcatgaaccatgac
ggtgaaggtgtcggccgtgccaatggatacacgctctttgtgcagggtgcgcttcccggt
gaaactgtgcgtgtgcgcgtgatgaaaaccaaaaagcagtacggctacgccaaactgctg
gagattgtgaaggcaagcccggatcgtgtatccgcgccttgcccgatctatgatcaatgc
ggcggatgccagattcagcatatgagttacgccggacagcttgcgtggaaacgccagctg
gtggtggataatttgcagcggattgggaagttgaatgtgttggtggaggatacaggcgaa
aagaatgcggatcaggcagctgaaccagctatttccgaagaacaagtgaacggcagcaat
cgtattcgtcttcggctggaaggtgtcatgaacgaagaagctgctgcgcaaggcattcgt
gtgctgcctaccatgggtatggacgagccgtggcgctatcgcaacaaggcacaggtgcct
atcggtgcagccgagggcggcttggtgggtggtttttacgccaaaggaagccatcggatc
atcgacatggatacttgcctcattcagcatgagcacaacgatgaagtggtcgccaaggtc
aaggagctaggtagccatctcggcattagtgcgtacaacgaagagaccggccgcggcctg
ctgcgccatgtggttgtgaagaaggcgttccgtacgggcgagatgatgctcgttctggtc
accaatggtcgggacatcccatacaaggatgaatggattggcagtattcgtgaagcgatc
ccgcatgtggcgagcatctgccagaatgtgaacaagaagcagaccaacgttatcttcggc
gatgaaacccgcgtcctgtggggtcgtgacgtgatctatgattatatcggggatgtacag
tttgccatctctgcgcgttcgttctaccaggtgaatccggtgcagacggaagtactgtac
gggaaaacggtggagtacgcagggttgagtggcaaagagactgtcattgatgcctattgc
ggcatcggtacgatttctcttttccttgcgcagcatgcggatcaggtgtacggggtggag
atcgtgcccgaagccatcgaagacgctcgcagcaatgcgatgttgaacgacatgaagaac
gtcaagtttgaagtcggtgcctccgaggatgttattccgcgttggaaagaacaaggcatt
gaagctgatgtcatcgttgtcgatccgccgcggaagggttgcgatccgcgcttgctggat
acaatcctggaaatgaagccggagcgtgtggtgtatgtaagctgtaatccgagtacattg
gcacgtgatttgcgcgtgctggaggatggcggatatcggacggttgaggtaacgccggtg
gatatgttcccgcacacggtgcatgttgagtcggtggcgatgttggtgcggaatggtaca
gagggctaa
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