Paenibacillus sp. E222: HW560_04455
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Entry
HW560_04455 CDS
T10443
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW560_04455 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pezz03019
]
HW560_04455 (rnr)
03016 Transfer RNA biogenesis [BR:
pezz03016
]
HW560_04455 (rnr)
Enzymes [BR:
pezz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HW560_04455 (rnr)
Messenger RNA biogenesis [BR:
pezz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HW560_04455 (rnr)
Transfer RNA biogenesis [BR:
pezz03016
]
Prokaryotic type
tRNA degradation factors
HW560_04455 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
CSD
OB_HELZ2
S1_RRP5
LcnD_C
Motif
Other DBs
NCBI-ProteinID:
QLG37439
LinkDB
All DBs
Position
complement(997092..999869)
Genome browser
AA seq
925 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFEIEDAADFKAFLIMLNTLEESGKVLLTRNNRY
GMPERMDLVRGRLQAHAKGFAFLIPEDREHPDVYIHANDMKSAMNGDTVLVKVTSQGPSG
GRLEGEIVRIVTRAVTQVVGVFQSHEVYGFVIPDDKRINRDIFIPRTNFNGAVDGQKVVA
KIVSYPEGRAAAEGEVIEILGHKDEPGIDILSVIRKHQLPEAFPDEVVEEAEKAPDAITE
EEIIQQGRRDLRGLNIVTIDGEDAKDLDDAVNVEKLPNGNYRLGVHIADVGYYVQENSKL
DQEAYNRGCSVYLVDRVIPMLPQRLSNGICSLNPQVDRLTLSCEMEFNDQMKVVKHDIFT
SVIKTKERMTYSNVRKILEGEEPELLERYKDLVDDFHLMKEIALKLRAMRMRRGAVDFDF
EESKIIVDEECKPVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFIYRVHEDPDQ
EKLQNFLAFAANFGHHVKGRGNTIHPRALQSLLEDINGTKEQTVISTMMLRSMKQAKYDS
EMSGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVIENNGALPENRQEYLAARMADIAQQ
SSERERVAVEAERDTEKMKKAEYMLDKVGEEFEGMISSVTSFGMFIELENTVEGLIRLSA
LTDDYYHFDDQHMALIGERTSKVFRIGDEVKIRVARVSMEEYTIDFEMVDMKPRGERPGG
FNGGRGGKGGRPAGGGGRGGAKSGSGGFSGSRGGKGTPTGAGGNRGGRSADESSKGGRGG
RSGASNSAGNAGGKGGGKPRGERRAGDAGGSTGRSKGAVSFGFGSGKGGYSSTAGGQEGT
SASGQGNALNSGSSRGEGSFKSGKGGGKGGKGGSGRKNTSPSGVFIGEGATPGGVQEGGA
PRRKRKKNKGAPANGTAAFVRKKKK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgataacagaacaacaattgctcgacttcatgcgggagaccgcttataaaccgatgact
tatcaggaactggaacagcacttcgagatcgaagacgcagctgatttcaaagccttttta
attatgcttaatacgttggaggaatccggtaaagtcctgctgacccgcaataaccgctat
ggtatgccagaacgtatggatttggtgcgcggacgtttgcaggctcatgcgaaagggttt
gctttcctcatccctgaggatcgggagcacccggatgtgtacatccatgccaatgatatg
aaaagcgcgatgaatggtgacacggtattggttaaagtcacgtcccaaggcccttctggc
ggtcgcttggaaggtgagatcgtccgtattgttacccgtgcggtcacgcaagtggttggt
gtattccaaagccacgaggtttatggcttcgtcattccggacgacaagcggattaaccgg
gatatcttcatcccgcgtacgaactttaatggagctgtagatgggcaaaaggtggttgcc
aaaatcgtcagctatccagagggccgggcagcagcagaaggtgaagtgatcgagattctc
ggtcataaggatgaaccgggtattgatattttgtccgtaattcgtaaacatcagctgcct
gaagccttcccggatgaagtggtggaagaagccgaaaaggcgcctgatgccattacggaa
gaagaaattatccagcaaggtcgccgcgatctgcgtggattgaatatcgttacgattgat
ggcgaagacgcgaaggatctcgatgacgctgtcaatgtagagaaactgcctaacggtaac
tatcgtctgggtgttcatattgccgatgtaggctattacgtgcaggagaactccaagctg
gaccaggaggcgtacaaccgcggatgcagcgtgtatctggtggaccgtgttattccgatg
cttccgcaacggttgtccaacgggatctgtagtttgaacccacaggtagaccgcttgacc
ctttcttgtgagatggagttcaacgaccagatgaaggttgtgaaacacgacattttcaca
agtgtgatcaagaccaaagagcggatgacgtattccaacgttcgcaaaattcttgaaggt
gaagagcctgaattgctcgagcgttataaggatctggtggatgatttccacttgatgaaa
gagattgccttgaagcttcgtgcgatgcgtatgcgccgcggtgcggttgactttgatttt
gaagaatccaaaatcattgtggatgaagaatgcaaaccagtcgatatcgtgaaacgggag
cgttcgattgcggagcaaatcattgaggaattcatgctggcagctaatgaaacggtagca
gagcatttccactggttgaaggttccgttcatctatcgtgtgcatgaagatccagatcag
gaaaaactgcaaaattttctcgcctttgcggcgaatttcggacaccacgtcaaaggacgt
ggcaacacgattcatccacgggcgcttcaatccctgcttgaggatattaacggaacaaag
gaacagacggttatcagtacaatgatgctgcgttccatgaaacaagcgaagtatgattct
gagatgtccggtcactttggtctggcagcagagttctacagtcacttcacatcaccaatc
cgtcgttatcccgatctcgtcattcaccgtgttattcgggaagtgattgagaacaacggg
gctttgcccgagaaccgtcaggagtatttggcagcacgtatggccgatattgcgcagcag
tcttcggaacgtgagcgtgtggcggttgaagctgagcgggatacggagaaaatgaaaaaa
gccgagtatatgcttgataaagtcggtgaagagttcgaaggcatgatcagcagtgttacc
agcttcggtatgttcattgaactggaaaatacggtagaaggtctgattcgcctgagtgcg
ctcacagacgactattaccattttgacgatcaacatatggctctgattggcgaacgcacc
tccaaagtcttccgcatcggtgatgaagtgaagattcgtgtggcgcgtgtgagcatggag
gagtacacaattgactttgaaatggtcgacatgaaacctcgcggcgaacgtccaggtggc
ttcaatggtggacgtggcggtaaaggtggacgtcctgctggtggaggaggacgcggcggt
gcgaagagtggttctggtggattcagtggctcgcgtggtggtaaaggcacccctactggt
gctggaggcaaccgtggtggcagatctgccgatgagagcagcaaaggtggacgtggcggt
cgtagcggagcttcgaactcagcaggaaacgcaggtggcaaaggtggcggcaaaccaaga
ggggagcgtcgtgctggagatgctggaggatcaacgggccggagcaagggagcggtaagc
tttggttttggctctggcaaaggcggttatagctctaccgcgggtggccaggaaggcact
tcagctagtggacaagggaatgctctgaacagcggcagcagtcgcggtgaaggtagcttc
aaatccggtaaaggcggaggtaaaggtggcaaaggcggtagtggacgcaaaaacacctca
cctagcggtgtgtttatcggagaaggagctacaccaggcggtgttcaggaaggtggagca
ccacgccgtaagcgcaaaaagaataaaggtgcacctgccaacggaacggcggcttttgta
cggaagaagaaaaagtaa
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