Paenibacillus sp. E222: HW560_05160
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Entry
HW560_05160 CDS
T10443
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HW560_05160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_05160 (mfd)
Enzymes [BR:
pezz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW560_05160 (mfd)
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HW560_05160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QLG37549
LinkDB
All DBs
Position
complement(1144484..1148011)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFSKDPDFGSITAGITSGMKEQLVSGLSGSARQIMLAALHQETNRPLLVVTHN
MFSAQKIAEDLQEALSPDQVLLYPANELVAAEAAVSSPETLGQRIDVLVRCAQGFRGVVV
IPFSGVRRYVPLPEVMANAQITIKQGNTLELDAFLLEMVKLGYERVERVESRGEMSVRGG
IIDFYPVTSSIAYRVELFDDEIDSIRTFDPADQRSIERIDEVTVLPCKELIADRERMEKA
ADTAVILLDQQLEKMTDRQAKLRLREEIHREIELLREHVYFSEMYKYISPLYPENKTIYD
YMPEDTLLVLDEPARLAETSKQLDRDESEWNLHLMQNGKTLPDLHLSADGDDLIYERPFQ
TLFMSIFLRQVPHTQPQNILNFISRGMQDFHGQMNVLKAEMERWQKAGVQVLMLANGEER
LDRMRRVLMDYDIPEPEMLIGNLQTGFEMPSIHLAVVTEGEMFSQKQRKVRKPIRNVDNA
ERIKSYSELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNEWTRVKNKVRTSVQDIADDLIKLYAERQTSKGFGFDKDSA
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIHVLSRFRSRKEQNETAKGIKAGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISELVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEPVPSDQWNTTLDLS
IDAYLPSDYIYDSIQKIEIYKKVAVIASFDDAMELEDELVDRFGDLPEAVINLLAVARMK
VYGKIYGIESISQRGDDLTVKFYEGREHAFELSKIAHIGNQFERRVQFEQGSHMLIHVKG
KGLGDKQLMELVEKFLESMKSAFKSKGELKDVSKV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatacaggctttttccaaagatccggacttcgggtccattacggcc
gggattacatccggtatgaaggagcaattggtttcgggcttatccggttcggcacgtcag
attatgctggctgccctgcatcaggaaacgaaccgacccctgctcgttgtgacacacaat
atgttttccgctcaaaaaatcgcagaagatttacaggaagcgctttcaccggatcaggtg
ctgctctatcctgccaacgaacttgttgccgctgaagctgctgtttccagtccggaaaca
ttgggtcagcgtattgatgtgttggtccgttgcgcccagggattcaggggcgttgttgtt
atcccattttccggggtacggcgctatgttccacttccggaagtaatggctaatgctcag
attacaattaaacaaggcaatacgctggagctcgatgcattcctgctggagatggtgaag
cttggatatgaacgtgtagagcgcgtagaatcacgtggtgagatgagtgtgcgtggagga
attattgatttctatccagttacatcgtccattgcgtatcgtgtggaattattcgacgat
gagatcgattccattcggacatttgatcctgcagaccagcgttccattgaacgaattgac
gaagtgacggttctgccgtgcaaagagttaattgcagatcgcgaacgcatggagaaggct
gcggatacagccgttattttgcttgaccaacagttggagaaaatgacggaccggcaggcg
aagctgcgtctgcgggaagaaattcatcgtgagatcgaacttctgcgggagcatgtgtat
ttctccgaaatgtataaatatatttcaccgctctatcccgaaaacaagacgatctacgac
tacatgccagaagatacattgcttgtactcgacgagccggcaaggcttgcagagacgtcg
aaacagcttgaccgggatgagtcggagtggaatctgcatttgatgcaaaacgggaagacc
cttccggacctgcatctgtcagcggatggggatgatctgatctatgaacgtccattccag
acgctgtttatgtccatctttttgcgtcaggttcctcatacccagccgcagaatattctc
aactttatcagccgtggaatgcaggacttccatggtcagatgaacgtgctcaaagcagag
atggagcgctggcagaaagccggggttcaggtgcttatgctggctaacggtgaggaaaga
ctcgatcggatgcgtcgggtactcatggactatgatatccctgagccggagatgcttatt
ggcaacctgcaaaccggatttgagatgccttccattcatctggctgtcgttaccgaaggc
gagatgttctcacagaagcagcgcaaagtgcgcaagccgattcgtaatgtggacaatgca
gaacgcattaaatcctatagtgagctgaaagtgggcgattatgtcgttcaccaaaatcac
gggatcggtaagtatctcggcatcggtacacttgaggttggcggtattcacaaggactac
atgcatattctctatgcaggtggagacaaactgtctgtaccgattgagcagattgatctg
attcagaaatatgtcggttcggaagagaaagagccgaaaatatataaactgggcggcaat
gagtggacacgggttaaaaataaagtccgcacatctgtacaggatattgctgatgatcta
atcaagctttatgcggaacgccagacgtcaaaaggttttggcttcgacaaagactctgcg
gaacagcaggagttcgaggacatgttcccttatgatgagacacgggatcaggtgcgtgca
atcgaagaaatcaagaaagatatggaacaaaatcgtccgatggaccgtttattgtgtgga
gatgttggttatggcaaaacagaggttgcgatccgtgccgcctttaaggctgccattgag
ggaaaacaggttgctgtattagtccctacaaccattctggctcagcagcattatgaaacg
ttccgtgagcgtttctccggttatccattcaacattcatgtacttagccgattccgttca
cgtaaagaacagaacgagacagccaaaggcattaaggcaggcacggtcgatatcgtcatc
ggtactcatcggttattgtcacaggatctggtcttcaaagaccttggcctgttaattgta
gatgaagagcagcgcttcggtgtaacgcacaaggaaaaactgaaaaagctgaaaacaaac
gtggacgtgctgacactgacagcgacgccgattccgcgtacccttcacatgtccatgctg
ggcgttcgggatctgtcggttatcgagacaccgccggaaaaccgttttccggtacagacg
tatgtcgttgaacacagtcaggcgcttgttcgtgaagcgattgaacgtgaattggctcgc
ggcggtcaggtgtactacctgtataaccgtgtgcagggaattcaggagatggctgcggaa
atttccgaattggtgccggaagccaaggttggtgtggggcatggacagatgtcggaaacg
gagctggagaaaaccattctggacttcctggatggtgaatatgacgtacttgtcagcact
agcatcatcgagaccggggtggatattcctaacgtaaatactctgatcgtgcatgacgcg
gacaaaatggggctctcccagctgtaccagctgcgtggacgggtcggtcgttccaatcgg
attgcgtatgcctatttcacataccaacgggacaaagtgctgaccgaagtggctgagaaa
cgtctgcaatcaattaaggaatttaccgaactaggttcaggattcaagatcgcgatgcgc
gatttatcgattcgcggcgcgggtaatttgctcggagctgaacagcacggctttatcgcg
tctgtcggattcgatctgtattctcagatgctggcagaggaaatcaacaaacgcaaagtt
acaatgctcggcgaagagccggtgccatccgatcagtggaacacaacgctggatctcagt
atcgatgcgtacttgccgtcggattatatttatgacagtattcagaagattgaaatttat
aaaaaagtggcggttattgcctccttcgacgatgcaatggaactggaagacgaattggtt
gaccgattcggagatctgccagaagccgtaatcaacttgctggcggtggccagaatgaaa
gtctatggcaagatctacggtattgaatccatctcccaacgcggagatgatcttacagtg
aagttctatgaaggcagagaacatgcatttgagctctcaaaaatcgcacacattggaaat
cagttcgaaagacgtgtacaatttgaacaaggatcccatatgcttattcatgtcaagggt
aaagggcttggggacaagcaactgatggagctggtagagaaatttctggagtccatgaaa
agtgcttttaaatcaaagggggaactaaaggatgttagcaaagtataa
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