Paenibacillus sp. E222: HW560_06200
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Entry
HW560_06200 CDS
T10443
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW560_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pezz03019
]
HW560_06200
03009 Ribosome biogenesis [BR:
pezz03009
]
HW560_06200
Enzymes [BR:
pezz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW560_06200
Messenger RNA biogenesis [BR:
pezz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW560_06200
Ribosome biogenesis [BR:
pezz03009
]
Prokaryotic type
rRNA helicases
HW560_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QLG37736
LinkDB
All DBs
Position
complement(1370962..1372407)
Genome browser
AA seq
481 aa
AA seq
DB search
MSKQQFKDYGLGEEIVKALDSLGYETPTEVQTKVIPVALENKDLVVKSQTGSGKTAAYGI
PVCELVDWNENKPQALILTPTRELALQVNEDITNIGRFKRIKATALYGQSPFHVQKAELK
QRTHVAVGTPGRVLDHIERGTLPLDRISYLVIDEADEMLNMGFIETVQSIIQALPSERVT
MLFSATFPEDVAKLSRKYMNNPVEIEIKASGLTTATIEHAVIHVPEVNKTALLQDLFIVE
NPDSCIVFCRTQENVDKLFRVMADLDYPADRIHGGMEQDERIEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKEGYVHRTGRTGRAGKTGKAFTLVTPKDGRRLAEIESY
IGFEIPVVKAPSEEAVDRRREEFEKRLKIVPDRKKDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKIEGVTADDIGIITILDNVTDVEILNGKGPLVLEVMQNTTIKKMQLKVRKGH
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcaacaatttaaagattatggacttggcgaagaaatcgtaaaagcgctggat
agcctgggctatgaaactccaacggaggttcaaaccaaagttattccagtcgcccttgaa
aataaagatcttgtggtcaaatcccaaacaggcagcgggaaaacagccgcttacggcatt
ccagtctgtgagctggtagattggaacgaaaataaaccccaggctttgattctcacgcca
acccgcgagctggctttgcaagtgaacgaagacattaccaatatcggacgctttaagcgt
attaaagcaaccgcactatacggtcagtctccttttcatgttcaaaaagccgagttaaaa
caaagaacacatgtcgctgtaggcacacctggacgggtactggaccatatcgaacgtggc
accctgccgctggatcggatctcataccttgtcattgacgaggccgatgagatgctgaac
atgggcttcatcgagacggtgcaatccattattcaagcactgcctagtgagcgagtgacg
atgttattttccgcgacgttccctgaagatgtagccaagctgtcacgcaaatacatgaac
aatccggtcgagattgagatcaaggcaagtggtcttaccacagccacgattgaacatgcc
gtgattcacgtgccagaggtgaacaaaacggcgctgcttcaggacctgtttattgttgaa
aacccagatagctgtatcgtgttctgtcgtacgcaggagaacgtggataaactgttccgg
gtcatggctgatctcgattatccagcggatcgcatccacggaggcatggaacaagatgag
cgcatcgaagtgatgaatgcattcagaagaggacaattccgttatctgattgcaacggat
gtagccgcgcgcgggattgatatcacgaatattacccatgtcattaactacgatattcct
ttggaaaaagagggatacgtacaccgtacaggccgtacgggtcgcgcaggtaaaacaggt
aaagcctttactttggttaccccgaaggatggcagacgcctggccgagatcgaatcgtat
atcggatttgagatccctgtcgttaaagctccttccgaggaagctgtggaccgtcgccgg
gaagagttcgagaagcgattgaaaatcgtgcctgatcgcaaaaaggacaagcgtgaacag
ttgaaccaacagatcatgaagctgaacttcaacggaggcaagaaaaagaaacttcgtgcg
gtagacttcgtgggcaccatcgccaagattgaaggcgtcactgcagacgacatcgggatt
attaccattctggataatgtaaccgatgtggaaattctgaacggcaaaggaccacttgtg
cttgaggtaatgcagaatacaacgatcaagaaaatgcagctcaaggttcgcaaaggtcat
aaatag
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