Paenibacillus sp. E222: HW560_09240
Help
Entry
HW560_09240 CDS
T10443
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HW560_09240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pezz03021
]
HW560_09240 (rpoC)
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_09240 (rpoC)
Enzymes [BR:
pezz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HW560_09240 (rpoC)
Transcription machinery [BR:
pezz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HW560_09240 (rpoC)
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HW560_09240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QLG38286
LinkDB
All DBs
Position
2120515..2124129
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VRALGKTSFTDEQQDAMLLTTVGKIIFNEIFPASFPYINDATRANLYQGTAEHSFVYEKG
ADLREAIMNAPLAGGVGKEYLGSIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGITVA
VSDVIVPEEKTEILRQSEEKAQIVTNQYRRGLITNEERYDRIIDIWSKSKDDITEILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETKEVIAHRNELIDSDKAEAIIKAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEIQGEAESKVYSVTYGSRVRVSEGMEIEA
GDELTDGSIDPKEMLRIKGVRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDTHEYERANKTAILSDKEPAVAKPILLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIKFAEPEDGQSSVEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgaatacatgaagatcgggcttgcttccccagaaaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaacgatcaactatcgtacgttgaaa
ccggaaaaagaagggctgttctgcgaaaagatttttggccctacaaaagactgggaatgt
cattgcggtaaatacaaacgcgtccgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagtgacacgtgcgaaagtacgccgcgaacggatgggccatattgagctcgctgctccg
gtatcgcacatctggtacttcaaaggtattccgagccgcatgggtctcgctttggatatg
tctccaagatctcttgaggagattatttattttgcatcatatgtagtaactgatccagga
gaaactccactggagaaaaaacagctgttgtccgagaaagaataccgcagctaccgtgag
aaatacggatatggattccaagctggcatgggtgcagaagccgttaaaaaactgcttcaa
gaccttgatgtggataaagagctcgaattcctgaaggaagagctccgcactgcacaagga
caacgtcgtaaccgtgcgattaaacgtttggaagttatcgaagcattccgcaactcgggt
aataaacctgagtggatgatcatggatgtacttcctgttatcccgccagaacttcgtcct
atggtacagctggatggtggacgttttgcaacgtctgacctgaatgacctgtatcgccgt
gtaatcaaccggaacaaccgtctgaaacgtttgcttgacctgggcgcgccagacattatc
gtgcaaaatgaaaaacggatgctgcaggaagctgttgacgcattgatcgacaatggccgt
cgtggacgccctgtaacgggtcctggtaaccgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggtaaacgggttgactattccggt
cgttccgttatcgtagtcggaccttacctgaaaatgtatcagtgcggtctgcctaaagat
atggcacttgaactgttcaagccttttgttatgaaagagcttgtaaataaaggccttgcc
cacaacatcaagagcgctaaacgtaaagttgagcgtgtaagtcctgaagtatgggatgtt
cttgaagaagtaattaaggagcacccggttctgctgaaccgtgccccaacacttcacaga
ctcggtattcaagcatttgaaccgattctcgttgaaggtaaagcaatccgtcttcacccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccaaatggccgtgcacgttccg
ttgtctgctgaagctcaagcagaagcacgtatcctgatgcttgcatcaggtaacattttg
aacccgaaagacggtaaaccggttgttactccttcccaggatatggtccttggttcttac
tacctgaccatggacaacaaggaagaaaaaggaacaggtatgattttgcgcacagtaaac
gaagctgtatccgcgtaccaacgtggtactgcaggtttgcatgctcgtgtagcgatcccg
gttagagcacttggcaaaacaagcttcaccgacgaacaacaagatgcaatgttgctgact
actgtcggcaaaatcatctttaatgaaatcttcccggcaagcttcccttacatcaatgat
gcaactcgtgcgaacctttaccaaggtaccgctgagcattcatttgtatatgagaagggt
gctgaccttagagaagcgattatgaacgctcctttggctggtggtgtcggtaaagaatat
ctcggttcgatcatcgcacgttgctttgaaatttatcatacaacggaaacagccgttatt
ttggataaaatcaaacaactcggattcacatactccactcgtgccggtattacggttgcg
gtatcggatgttatcgttccggaagagaaaaccgaaattcttagacagtcggaagaaaaa
gcacaaatcgttacgaaccagtaccgtcgtggtctgattacgaacgaagagcgctatgac
cgcatcattgatatctggtcgaaatcgaaagatgatatcaccgagattctgatgaaatcg
atggatcgttataactccatcatgatgatggttgactccaaagcgcggggtaacaaatcg
caaattacccaattgggcggtatgcgtggtctgatggccaacccatctggtcgaattatc
gaactcccaatcaaatcgaacttccgtgaaggtctgacagtactcgagtactttatttcc
actcacggtgcgcgtaaaggtctcgcggatacagccctgcgtacagccgactcaggttac
ctgactcgtcgtctcgtagacgttgcacaagacgtgatcgtgcgtgaagatgattgtggt
acagataaaggctttacggtaagtcgtattcaggatggtaaagaggttatcgaggatctc
tatgaccgtattgaaggcagatactgcttcgaaactgttcgtcatccggaaacaaaagaa
gttattgcacaccgcaatgagctgattgactccgataaagcagaagcaatcatcaaagct
ggcgtaactaaattgcaaatccgttccgtactcagctgccgtgctcgtcacggtgtttgc
aagaagtgttatggtcgcaacttggcgactggtaaacacgtggaaatcggtgaagcagtt
ggtattatcgcagcacaatccattggtgagccaggaacacagttgacaatgcgtacattc
cacaccggtggtgtagccggagacgatattacgcaaggtttgccgcgtatccaggaattg
tttgaggctcgtaatcctaagggtcaagcaacaatcagtgagattgatggtgttgtcaaa
gagattcgcgaagcgaaagatcgtcgtgaaatcgaaattcaaggtgaagcagaatccaaa
gtttactctgttacctacggttcccgtgtgcgcgtaagcgaaggcatggaaattgaagct
ggtgacgagttgacagatggttctatcgatccaaaagaaatgctgcgcattaaaggcgta
cgtggcgtacagaactacattttgcaggaagtacagcgcgtataccgtaaccaaggcgta
gaaatcaatgacaaacacgttgaagttatgatccgtcaaatgttgcgtaaaatccgtatc
gtcgatgcaggggacactacgctgttgccaggatcattcgtggatacgcatgagtacgaa
agagctaacaaaacagcgattctgagtgataaagagccagcggttgcgaaaccaatcctg
ctcggtattacgaaagcatccctggaaacagactcattcctctcagcggcatcgttccaa
gagactacacgtgtcctgacagatgcagcgatcaaaggtaaagtcgatcagttgctcggt
ctgaaggaaaatgtaatcatcggtaaattgattcctgcaggtacgggcatgaaccgttac
cgcagcatcaaatttgctgaaccagaagatggccaatcttcagtagaagaacttgagcca
gtttcggttgattaa
DBGET
integrated database retrieval system
