Paenibacillus sp. E222: HW560_12480
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Entry
HW560_12480 CDS
T10443
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03420
Nucleotide excision repair
pezz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HW560_12480
03430 Mismatch repair
HW560_12480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_12480
Enzymes [BR:
pezz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW560_12480
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HW560_12480
MMR (mismatch excision repair)
Other MMR factors
HW560_12480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Viral_helicase1
SLFN-g3_helicase
AAA_30
DEAD
AAA_11
PhoH
NACHT
ResIII
Mg_chelatase
Catalase_C
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QLG38831
LinkDB
All DBs
Position
2792951..2795137
Genome browser
AA seq
728 aa
AA seq
DB search
MSDSFQSAYQEEEYRLERTMKEVDSQLERLRNIPVYTGHDFTEQVLEAGREERRTALSKS
AQQPYFGRLDFEEQGSGARKPLYIGKIGVDREEVGEHPLVIDWRAPVASLFYSFTGGEAS
ATYEAPEGLIEGLVYLKRNVVIRQRILERVADTYNRDSDQPAVSDEFLVYRLGENKDNKL
RDIVSTIQAEQDQIIRAARNTALIIQGVAGSGKTTVALHRLAFLLYQYKEQVSAEKMVIF
APNHMFLDYISDVLPELGVGDIQQRTFPDWAMNLLGLDLPLADTSETLNTWFETPDARPE
LNEDVPGRYKGSIRFMELIREWLSGMEGESVPDMDFSPWDGAVLSKAEIENWFGEEYKHY
PLAKRKERVMARIHRWIEMELKKPCPEAVRKERKKKAATREKAYAKKWPQYEPLTLYKQL
FKVVKGGSVPASLSALIPKLVMKQTAADLKQDIIREEDLPALVYIHTLVHDIEGSERFDH
VVIDEAQDFSPFHVALLDQFVKGHSFTILGDLSQGIHEYRGVHAWEEMSSLFPEEQNAYF
ALTRSYRSTMEIIDYANTILERGVKSGITAIPVFRSGDPVRTLSYGVEGRTASLEQALKL
LTVKDYRTVSILTRTLHEAKELHRKLQAAGWDLNLIDGGKKQYTGGHSVLPVYLSKGLEF
DAVIVADADEKHYLPNAGDAKLLYVGCTRALHELWLFHDGQLPDYAAATHNPEGESVAIQ
GWPDSEAE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagctttcaaagtgcctatcaagaagaagagtacaggttagagcgaacgatg
aaggaagtggacagtcagctggaacggctgcggaatattccggtgtataccggccacgac
ttcacagagcaagtgctggaggccggacgtgaagagcgccgcaccgccttgtccaagagc
gcgcagcaaccctatttcggacgcttggatttcgaagaacagggcagtggtgcacggaaa
ccgctgtatattggcaaaatcggcgtagaccgcgaagaggtgggagagcatccgctcgtc
atcgattggcgtgctcctgtcgcaagcctgttttactcatttaccggaggggaagcctcc
gcaacgtatgaagccccggaaggactcattgagggcctggtttatctgaaacgaaacgtt
gtcattcggcagcgtatattggaacgtgtggcagatacgtacaatcgggacagtgaccag
ccagccgtatcggatgaattcctcgtgtatcgattgggtgagaacaaagacaacaaactc
cgtgatatcgtatctaccattcaggcggagcaggatcagatcattcgtgcggcgagaaac
accgcattgatcattcagggtgtggccggttcgggtaaaacaaccgtcgcactgcatcgc
ctcgcctttttactctatcagtataaggagcaggtatctgcggagaaaatggttattttc
gcacctaaccatatgttcctggattacatatcggatgtactcccggagctcggtgtaggg
gacattcagcagcgtacattcccggattgggcgatgaacctgctggggctggacctacct
ttggcagacacgtcggagacattgaacacctggtttgaaacgccggatgcacgtcctgaa
ctcaatgaggatgtgccagggcgctacaaaggatcgatccgcttcatggaactgatccgg
gagtggttatccgggatggaaggagaatccgtacctgatatggactttagtccgtgggat
ggtgcagtgctcagcaaagccgagattgagaactggtttggggaagagtacaaacattat
ccgctggcaaaacgaaaagagcgggttatggcgcgtattcatcgctggattgagatggaa
ctcaagaaaccttgcccggaagccgttcgtaaagagcgtaaaaagaaagcggcaacccgt
gagaaagcctatgccaaaaaatggcctcaatatgaaccacttacgctgtacaaacagctg
ttcaaggttgttaaaggcggttcggtacctgcctcgcttagcgcgcttattcccaaattg
gtgatgaagcaaacggcagcagatctgaagcaggatatcatccgtgaagaggatttgcct
gcattggtgtacattcataccttggttcacgatattgaaggctccgagcgattcgatcac
gttgtcattgatgaagcgcaggacttttctccttttcatgtggcgttattggatcagttt
gtcaaagggcattccttcaccatactgggcgatctgtcccaaggcatccatgagtaccgt
ggtgttcacgcgtgggaagagatgagttcgctgtttcctgaggaacagaatgcatacttt
gcattgacgcgaagttatcgctcgacgatggaaattatcgattatgccaatacgattctg
gagcggggcgtcaagagtggcattacggcgattcctgtattccggagtggtgatcctgta
cggacattgtcctatggggtagaagggcgcacagcgagccttgaacaggctctgaagctc
ttaacggtcaaagactatcgtacagtttccattctgacccgtaccctgcatgaagcaaag
gagcttcaccgtaaacttcaggcagcaggctgggatctgaacttgattgacggcggcaaa
aaacagtacacaggcggtcactccgttttacctgtctatttgtcaaaagggctggagttt
gatgcagtaatcgttgcggacgcggatgagaaacactatttgcccaatgcgggtgatgcg
aagctgttatacgttggctgtacacgggcgttgcacgaattgtggttattccacgacggc
cagctgccagactatgctgctgcaacccacaatccggaaggcgagtctgttgccattcag
ggttggcctgacagcgaggcagagtga
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