Paenibacillus sp. E222: HW560_15055
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Entry
HW560_15055 CDS
T10443
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pezz Paenibacillus sp. E222
Pathway
pezz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HW560_15055 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pezz03021
]
HW560_15055 (rpoD)
Transcription machinery [BR:
pezz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HW560_15055 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
QLG39282
LinkDB
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Position
3376089..3377228
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AA seq
379 aa
AA seq
DB search
MANDQHTELETELTLDQVKDQLIESGKKRASLNYKEIIEKLSPFEQDAEQMDEFYEQLSD
LGIDVVNENDEEVTLRPSEDSENNTREGDDEFHFDDDLSLPPGIKINDPVRMYLKEIGRV
PLLSADDEVELAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLI
KAVEKFDHKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE
LGREPTPEEIAAEMDLSVEKVREITKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPAD
AAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKRLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagaaacagaattgacgctggatcaggttaaggat
caattgattgagtcaggtaagaaaagagcttcgttgaactacaaggaaattatagaaaaa
ctctccccgtttgagcaagacgctgagcagatggatgagttctatgaacaactgagcgat
ctgggtattgatgttgtgaacgaaaatgatgaagaggtaacccttcgccctagtgaagat
tccgagaacaacaccagagagggagacgatgaattccactttgatgatgatctgagcctt
ccaccaggaatcaaaatcaacgaccctgttcgtatgtatctcaaagaaattggtcgtgta
cctttgttgtctgcggatgacgaagtagaactggctaaacggattgaaaacggggatgaa
gaggcgaaacgtcgtttggctgaagctaaccttcgtctcgtggtcagtatcgccaagcgt
tatgttggacgtggcatgttgttcctggatctgattcaggaaggtaacatgggtctgatc
aaagctgttgagaagttcgaccacaaaaagggctataaattcagtacgtatgcgacatgg
tggattcgccaagcgatcacccgtgcgattgcggaccaggcgcgtaccatacgtatccct
gtgcatatggtggagacgatcaataagctgatccgggtatcccgtcagctgttgcaggaa
cttgggcgtgaaccgacaccagaagaaatcgctgccgagatggatctgagtgtggaaaaa
gttcgtgagattacgaagattgctcaggaaccggtttccttggaaacaccgattggtgag
gaagatgattcccatctgggtgatttcatcgaggatcaggaagcgctggctccggcggat
gctgctgcttatgagctgctgaaagaacagctcgaagatgtcctggatactttgactgag
cgtgaagagaatgtgcttcgtctgcgttttggtctggacgatggacgtacaagaacgctg
gaagaagtgggcaaggtatttggtgttacgcgtgagcgtattcgtcagattgaagccaag
gctcttcgtaaattgcgtcaccctagccgcagtaaacggcttaaagatttcctcgaataa
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