Paenibacillus sp. E222: HW560_18465
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Entry
HW560_18465 CDS
T10443
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pezz Paenibacillus sp. E222
Pathway
pezz02024
Quorum sensing
pezz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW560_18465 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HW560_18465 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pezz03019
]
HW560_18465 (hfq)
03036 Chromosome and associated proteins [BR:
pezz03036
]
HW560_18465 (hfq)
Messenger RNA biogenesis [BR:
pezz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HW560_18465 (hfq)
Chromosome and associated proteins [BR:
pezz03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HW560_18465 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
QLG39898
LinkDB
All DBs
Position
4080188..4080430
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AA seq
80 aa
AA seq
DB search
MNKSINIQDTFLNQLRKENIPATVYLTNGFQIRGTIKAFDNFTIVIDSDGRQQMVYKHAI
STFTPQRSVSLMQQDNSGEA
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagtccatcaacatccaagatacgttcttgaaccaactgcggaaagaaaacatt
ccagctacggtctatctgaccaatggctttcaaatccgcggaacgatcaaggcatttgac
aattttacgatcgtcattgacagcgacggacgccagcaaatggtctacaagcacgccatc
tccacgttcacgccgcaacgcagcgtatcgctgatgcagcaagataatagcggcgaagct
taa
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