Paenibacillus sp. E222: HW560_18960
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Entry
HW560_18960 CDS
T10443
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HW560_18960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_18960
Enzymes [BR:
pezz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HW560_18960
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HW560_18960
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HW560_18960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
NFACT_N
DUF7573
Zn_ribbon_8
Zn_ribbon_TFIIB
Cas12f1-like_TNB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QLG39980
LinkDB
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Position
4185625..4186446
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AA seq
273 aa
AA seq
DB search
MPELPEMENYRTLLSEKILDLPITGVVVNREKSINIDPDVFTRELTGNRIIFVERRAKHL
IFHLANGKRLVLHLMLGGMIFWGTEAERPDRSTQVEIQFGEYTLFFIGLRLGYLHLLTSK
ETEEAMSDLGPEPLDRRMNAERFAALLKGRRGTLKTTLVNQHIIAGIGNCYSDEIAFAAG
LRPSSKTQNIAASPELTARLYHSVQSVLREAASEGGYMEMPLMQGDTKTGSFDEQCRVYD
REGETCPRCGGTIARVEITGKKAFFCPDCQHEA
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccggaaatggaaaactaccggaccttgctgtccgagaaaatactcgat
ttgccgattacaggtgtggtggttaaccgtgaaaagtcgattaatatcgatcctgatgtg
ttcacacgtgaactgacaggcaatcgtatcatatttgtagagcgccgggccaaacatctg
atctttcacctggctaatggtaagcggcttgtcctgcacctcatgctgggtggaatgatt
ttctggggcacagaagctgaacgtcctgatcgctccactcaagtggaaattcagtttgga
gaatatacgttattctttatcgggctccgtttaggatatctgcatctgcttacttccaaa
gagacggaagaggctatgtctgaccttggacctgaacctcttgatcggcgcatgaatgca
gaacgttttgctgccctgttgaaaggacgtcgggggacactcaaaactacactggtcaac
cagcacattattgcaggcatcggaaattgttattcagatgagattgcatttgcagcaggc
ctgagaccaagctccaagacgcaaaatattgccgcttcgcctgaactcacagcacgtttg
taccattctgtgcaatccgtgttgcgggaagctgcatcggaaggcggttatatggaaatg
ccgctgatgcagggagacaccaagacgggaagttttgacgagcagtgtcgagtgtatgat
cgtgaaggggaaacttgccctcgttgtgggggaacgatagcacgcgtggaaattacgggc
aagaaggcttttttctgtccggattgccagcatgaggcctaa
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