Paenibacillus sp. E222: HW560_27015
Help
Entry
HW560_27015 CDS
T10443
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pezz Paenibacillus sp. E222
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pezz03032
]
HW560_27015 (topA)
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_27015 (topA)
Enzymes [BR:
pezz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HW560_27015 (topA)
DNA replication proteins [BR:
pezz03032
]
Prokaryotic type
DNA Topoisomerases
HW560_27015 (topA)
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HW560_27015 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Toprim_3
GramPos_pilinD1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QLG41407
LinkDB
All DBs
Position
complement(6091115..6093205)
Genome browser
AA seq
696 aa
AA seq
DB search
MADALVIVESPSKAKTIGKYLGSKFIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDETADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EINDFEPEEYWSITAKLTADGNPFEAKFHQLNGTKTELGSEAEVQAILKQIEGASFTVKE
VKEKERSRNPSAPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKEYIIGKYGEPFAPETPRNYSKKAANAQDAHEAIRPTSILRDPDSI
KSFMSRDQFRLYKLVWERFIASQMSSAVLDTLSVDIAAGDTIFRAAGSKVRFQGFMKVYV
EGNDDGTTEEDRLLPPLKNGDVLENREIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLAEFYESFEKRLEFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCKEGHVVERRSKKGRIFYGCDKYPECDFVSWDKPSAKP
CPSCGSLMIEKRNKQGTRLQCTSCDHQEPVEEPEEE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcactcgtaatcgtggagtcgccctcaaaggcgaagacgatcggcaaatat
ttaggcagcaagttcatcgtgaaagcttcgatgggacatgtacgcgatttgccaaagagt
cagatcggcgttgaggtggaaaacgattttaatccgaaatatattacgatccgcggcaaa
ggttcaattttgaaagaactgaaggatgcacgaaagaaagtgaaaaaagtgtatctcgca
gctgacccggatcgcgaaggtgaggctattgcttggcatttggcccatgcacttgaactg
gatgaaactgccgattgccgagtcgtatttaatgaaattacgaaacaggctgtcaaagat
gcgttcaaaacgccgcgcaagatcaatatggatctggttaacgcgcagcaggcaagacgt
attctggatcggctcgtaggatataaaattagtccattattatggaagaaagtcaaaaaa
ggattgtccgctggccgcgttcagtccgtggctgtcaaaatcattttggatcgtgaaaac
gaaattaatgattttgaaccggaagagtactggagcattactgccaaactgacagcggac
ggaaatccgtttgaagccaaattccatcagttaaacggcaccaagaccgaacttggcagt
gaggcagaagtacaggccattttaaaacagatcgagggcgcttcttttacagtcaaagaa
gttaaagagaaggaacgcagccgtaacccttctgctccgtttacaacgagttccttgcag
caggaagcagcgcgtaaattgaatttcagagcttccaagacgatgtctgtcgcccaacag
ctgtatgaaggggtagacctcggaaaagaaggcacagtcggtctcattacgtatatgcgt
acggactctacccgaattgcagcatcggctcaggaagaagccaaggaatacattattggc
aagtacggtgagccatttgcaccagagacgcctagaaactattccaaaaaagcagccaat
gcccaagacgcgcatgaagcgattcgtccaacgtcaattttgcgtgatccggattccatt
aaatcgtttatgagtcgtgatcaattccggttgtacaaactggtttgggaacgttttata
gcgagccagatgtcatctgccgttctggatacactctccgtggacattgctgcaggagat
acaattttccgggcagctggttcgaaggttcgtttccaaggattcatgaaggtatatgta
gaaggtaatgatgacggcacaacggaagaagatcgtctgctgcctccgctgaaaaatgga
gatgtgctggagaatcgggaaattgagccgaaacagcattttacacagccgccgccacgt
tatacggaagcaaggttggttaaaacacttgaggaactgggcatagggcgtccgagtaca
tatgcgccaacgctggagaccattcagaagcgtggatatgttgccattgaagagaagaag
ttcatgccaacggaattgggcgaactcgtcatcgaacagatggaggagtttttcccggag
atcctgaatgtggagttcaccgccaacatggaaggtgatcttgaccatgtggaggaaggg
tcggaggattgggtcaaagtactcgcagaattctacgaatcttttgagaaacgccttgag
tttgcagaagaagaaatgaaagaaatcgagattgaagatgaagtatcggatgaaatatgt
gagaagtgcggcaaaccgctcgtttataagctgggccgtttcggcaagtttctcgcatgt
tccggatttccggattgccggaataccaaaccgatcattaaggatatcggtgtaacttgt
ccgaagtgtaaggaagggcatgtggttgaacgccgcagtaaaaagggacgtattttctat
ggttgcgacaaatatcctgaatgtgattttgtatcatgggataaaccgtcagcgaaacca
tgtccaagttgtggctcactaatgattgagaagcggaacaaacagggaacacgattgcag
tgtacttcatgtgatcatcaagagccggtagaggaaccggaagaagaatga
DBGET
integrated database retrieval system
