Paenibacillus sp. E222: HW560_30835
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Entry
HW560_30835 CDS
T10443
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pezz Paenibacillus sp. E222
Pathway
pezz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pezz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW560_30835 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pezz03019
]
HW560_30835 (recQ)
03400 DNA repair and recombination proteins [BR:
pezz03400
]
HW560_30835 (recQ)
Enzymes [BR:
pezz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HW560_30835 (recQ)
Messenger RNA biogenesis [BR:
pezz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW560_30835 (recQ)
DNA repair and recombination proteins [BR:
pezz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HW560_30835 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QLG42082
LinkDB
All DBs
Position
complement(6909664..6911544)
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AA seq
626 aa
AA seq
DB search
MSVQTPTLEEAQGLLQKYYGYPDFREGQKKIVASLLEREDTLGIMPTGGGKSICYQIPAL
LYSGLTLVVSPLISLMKDQVDALTTAGIAAAYINSTLSGKEVNDRIRAAQRGELKLLYVA
PERLELDWFREEMGYLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDSLPERPVVAAFT
ATATPEVMGDILRLLRLQDPQTYVTGLGRDNLAFSVLRGESKKDFVLNYAREHASEPGIV
YAATRKDVDDLHQRLLQAGLPAGRYHAGMTDDERAQSQEAFLYDDIRVMVATNAFGMGID
KSNVRYVLHYSMPKNMEAYVQEAGRAGRDGEPSQCILLFGAQDIITQKFLIEQNPMEGDR
KQNDYRKLQQMVDYCYTTRCLRSAQLDYFGEVHEDKPCGICSSCTDDRELVDMTIDAQKI
FSCIHRMRERYGVSLVASVLKGSRAKKVLDYGFNSLPTYGVMGNRTEREIAEIINVMVSE
GYLMLSEGQYPVVRLQPLAVEVLKGQREVMQRVVRKTAATASGTNYGGRRGRDAMPSAVN
ETVFEQLRLIRRDLAAKEHVPSYIIFNDATLREMSVVCPQTERDMLDIKGVGEVKYRKYG
LPFLEFFQKQTGEDVDTDDDAFYEYD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcaaacacctacattagaagaagcgcagggtctcctgcaaaaatattatggc
taccccgacttccgtgagggacagaaaaagatcgtagccagcctgctcgaacgtgaagat
acgctgggtattatgccaaccgggggcgggaaatcgatctgttatcagatccccgctttg
ttatattcgggtctgacgcttgtcgtctccccgctgatctcgttaatgaaggaccaggtc
gatgcgttgacgaccgccggaattgctgccgcgtatattaatagtacacttagcggcaaa
gaagtgaatgatcgcatccgcgccgcgcagcgcggtgagctgaagctgctctatgtcgcg
cctgagcgactggagctggactggttccgcgaggagatgggctatttgcctatctcgtgc
gttgctgtggatgaggcccactgtgtgtcacagtgggggcatgattttcggacgagctac
ctggcggtagcgccgtttgtggacagtttgccggagcggccggtggttgcggccttcacg
gcgacagcgacgcccgaggtcatgggcgatattctgcggctactgcgtttgcaggacccg
cagacgtatgtgaccggacttgggcgggataatctggcttttagcgtgctgcgcggcgag
agcaagaaggactttgtcctgaattacgcgcgcgagcatgccagcgagccgggtattgta
tacgccgcgacccgtaaggacgtggacgatctgcatcagcgtttattgcaggcaggcttg
ccagcaggacgctaccatgccgggatgacggacgatgaacgagcccagagccaggaagct
tttttgtacgatgatatccgggtaatggtggcgaccaatgcgttcgggatggggattgat
aaatccaacgtgcgttatgtcttgcattacagcatgccgaagaacatggaagcgtatgtg
caggaagccggtcgtgcgggacgggacggagagccgagccagtgcattttgttattcggg
gcacaggacattatcacccagaagttcctgatcgagcagaacccgatggagggcgaccgc
aagcagaacgactacaggaagctgcaacagatggtggattattgttatacgacgcgttgt
ctgcgcagtgcacagctggattatttcggtgaggtgcatgaggataagccgtgcggtata
tgcagttcatgtacggacgatcgcgagctggtggatatgacgattgatgcgcagaaaata
ttcagctgcattcaccggatgcgtgaacggtatggggtatcgctggtcgcttcggtgctc
aaaggctcccgtgccaaaaaagtgctcgattacggcttcaactccctgccaacctatggc
gtgatgggtaatcgtacggaacgtgagatcgcggagatcatcaacgtcatggtatcggaa
gggtatctgatgctgtccgaggggcagtatccagttgttcgtttgcagccactggcggtg
gaagtgctcaaaggtcagcgtgaagtgatgcagcgggtggtccgcaagacggcggcgacg
gcttcgggtacgaactatggcggacgtcgtggacgcgatgcaatgccatctgcggttaac
gagacggtatttgagcagcttcgtctgatccgtcgtgatctggcggcgaaagagcatgtg
ccgtcgtacattattttcaatgacgcgaccttgcgcgagatgagtgtggtatgtccacag
acagaacgtgacatgctggatattaaaggggtcggtgaggttaagtaccgtaagtacggg
ctgccgttcctcgagtttttccagaagcaaacgggcgaagacgtggatacggatgatgat
gcgttttacgagtatgattag
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