Plasmodium falciparum 3D7: PF3D7_0602100
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Entry
PF3D7_0602100 CDS
T00095
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfa
Plasmodium falciparum 3D7
Pathway
pfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF3D7_0602100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfa03019
]
PF3D7_0602100
03041 Spliceosome [BR:
pfa03041
]
PF3D7_0602100
03009 Ribosome biogenesis [BR:
pfa03009
]
PF3D7_0602100
03016 Transfer RNA biogenesis [BR:
pfa03016
]
PF3D7_0602100
Enzymes [BR:
pfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PF3D7_0602100
Messenger RNA biogenesis [BR:
pfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PF3D7_0602100
Spliceosome [BR:
pfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PF3D7_0602100
Complex C
U4/U6.U5 tri-SnRNP related factors
PF3D7_0602100
Ribosome biogenesis [BR:
pfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
PF3D7_0602100
Transfer RNA biogenesis [BR:
pfa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PF3D7_0602100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
3885738
NCBI-ProteinID:
XP_966011
PlasmoDB:
PF3D7_0602100
UniProt:
C6KSM1
LinkDB
All DBs
Position
6:join(92506..96422,96533..96668)
Genome browser
AA seq
1350 aa
AA seq
DB search
MSNNIDDLFDVFEENEIPEIISIKDEEQQQEKKNHIIQNDNEIITSTNNSKNEDEEEKEE
TEKNINKQNNNINNIDKDDVNKDNVGNHKKENLYKDINIENYKINVEYLIKNKKAEENIK
KQIQEEIYSDIQNFDKTNKNVNKIRKLSLQENNNINNNHINGKNINNNINEDNLTGETYP
NDDSIPQENNKITNKLIVEETIIENSKTINNDDVLVLEEFGGDVNCIHKCVRPQSYVHNE
IKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRV
IYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGSSLTKE
VKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACH
IVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKDNFIKAVNVIKEKMNTSEENHHQQH
INKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEV
IKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVL
FSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIVIIML
DTPLHWREAHKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMKKNLS
QKILAKKKVEEHIKQIFNHLTNIHLDENNNEITKDELLTKIMYNNYEQIKNNQNLGTSSE
LKIKDTSSNDEVILNADKHKEIKEEFKEEYTNYSSYSTQHYNENVINKELLNYSTIFSCI
SNFYTMKQKLIDVGETYRYILTMKKHITPYLSLGRLLYIIQEDLRWGWCICIEGQLIEHK
KANDNQKNKHNNSNNNNNNNHSGDHNNLKQAKSEQETLFVECLVPCNHNMKRKLTINDDD
DDNINHNNNNYGEEYQPASDRSKARWKVISFNIKCVYQLSAVVLSIDKPFDKKNEEQIEN
IKTKYNTMVTCLKGEKNIPVINPNQMGIKNETFISIVKNLKFHENIINKNKLLNNKNLNK
YYQMYSKYVALQCEKNILESNIEKCRFIVLKKELKNMLVLLESLNYIEVSYNLENLKNEK
DIKTIENSITEHIKNERIMNIKNETYKNNHEEKNYVVTMKGQIASAILSVDELVISELFF
SNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQIIKTANHVATKMNECGMN
INLKDYIDKFKSAIMPIALLWARGHSFVEILSDSQIYEGSIIRTLRRLDELIRQMICAFR
GINNDSMCETLTLATNKLRRGIPFSPSLYL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaatattgatgatttatttgacgtttttgaagaaaatgaaataccagaaatt
atttcaataaaagatgaagaacaacaacaagaaaaaaaaaaccatatcatacaaaatgac
aacgaaattataacttcaactaataatagtaaaaatgaagacgaagaagaaaaagaagaa
actgaaaaaaatataaataaacaaaacaacaatattaacaatatagataaagatgatgta
aataaagataatgtaggaaatcataaaaaggaaaatctatacaaagatataaatattgaa
aattataaaattaatgtagaatatttaattaagaataaaaaagccgaagaaaatataaaa
aaacaaatacaagaagaaatatatagtgatatacaaaattttgataaaacaaataaaaat
gtaaacaaaataaggaaattatcccttcaagaaaataataatataaataataatcatata
aacggaaaaaatattaataataatattaatgaagataatctaacgggggaaacataccca
aacgatgatagtatccctcaagaaaataataaaataacaaataaattaattgtagaagaa
acgataattgaaaatagtaagactataaataatgatgatgttctagtattagaagaattt
ggaggggatgttaattgtattcataaatgtgttagacctcaaagttatgtacacaatgaa
attaaagaacctttaattccagctaggacatataaatttgaattagatacttttcaaaaa
aaatctatagaatgtctagaaagaaatgaaagtgtattagtatcagctcatacttcagca
ggaaaaaccgtaatagcagaatatgccattgctttaggacttcgagataaacaaagagtt
atttatactagtccaattaaagccttaagtaatcaaaaatatagagatttaggtgaagaa
tttaaagatgtagggctaataacaggagatatttctattaaccctgaagcctcaattatt
gttatgacaaccgaaattttaagatcaatgttatatcgtggttcctctttaacaaaagaa
gtgaaatgggttatatttgatgaaatacattatatgagagatagagatagaggtgttatc
tgggaagaaactattattcttttacctttaatggttagattcatttttttaagtgcaacc
atacctaacggtattcaatttgctgaatgggtaagtagcattaaaagtcaagcttgtcat
attgtatacacagactatcgacctacacctttacaacattatatatatccaacatctagt
gaaagtgtatttttaatatgtgatgaaaataaagattttaaaaaagataatttcataaag
gctgtgaatgtaattaaagaaaaaatgaacacatcagaagagaatcatcaccaacaacat
ataaataaatatacaaaaaaaatgagaaaaacaacatatgatatagaaaaaattgttcaa
atgtgtcattctagaaattatacacctttaattatttttgcattttctaaaaaagaatgt
gaagttaatgcgacagctatgcataaaattgatttaaccagtgatacagaaaaagaagtt
ataaaagaattatatgaaaatgctatacgcatattagcagatgatgatagatcccttcca
caagttcaatttattttacctttacttttaagaggtataggtatacatcatggtgggctg
ttacctataattaaagaaatcatagaaattatgtttcaagaatcattattaaaagtgtta
tttagtactgaaacattttctatgggtattaatatgccagcaaaaacagttgtatttaca
tcattaacaaaatttgatggattagaaaaaagattaataacatcaggagaatatattcaa
atggcaggaagagcaggaagaagaggattagatgatagaggtattgttattattatgtta
gatacacctttacattggagagaagctcataaattatttgttggagaagctaatagatta
gttagtcaatttcatctaggttataatatgatcttaaatttattacgaattgaaggcatt
actcctgaattcatgattgaaagatcgtttatacaatatcaaatgaaaaaaaacctttct
caaaaaatactagccaaaaaaaaagtagaagaacatattaaacaaatttttaatcattta
acaaatattcatttagacgaaaataataatgaaattactaaagatgagttacttacaaaa
attatgtataataattatgagcaaattaaaaataatcaaaacttaggtacttcttcagaa
ttgaaaattaaagatacctcttctaatgatgaagttatcttaaatgcagataaacacaaa
gaaataaaagaagaatttaaagaagaatatacaaactattcatcatacagcacacaacat
tataatgaaaacgttattaataaagaattattaaattatagcactatcttttcttgtata
tctaatttttacaccatgaaacaaaaattaatagatgtaggagaaacatatcgatacata
ttaacaatgaaaaaacatataaccccatatttatctctaggtagactattgtatataatt
caggaggatttacgttggggctggtgcatatgtatagaaggtcaacttattgaacataag
aaagcaaatgacaaccaaaaaaataaacacaacaacagcaacaataataataataataac
cattctggtgatcataataatttaaaacaagctaagagcgaacaagaaacattatttgtt
gaatgtcttgtgccttgtaatcataatatgaaaagaaaactaaccataaatgatgatgac
gatgataatataaatcataataataataattatggtgaagaataccaaccagcaagtgat
agatcaaaagccagatggaaagttatatcctttaatattaaatgcgtttatcaattatct
gctgttgtcctaagtatagataaaccatttgataaaaagaatgaagaacaaattgaaaat
attaaaaccaaatataatactatggtaacttgcttaaaaggagaaaaaaatattccagtt
ataaatcctaatcaaatgggaataaaaaatgaaacttttatttcgattgtaaaaaattta
aaatttcatgaaaatattataaataaaaataaactattaaataataaaaacttgaacaaa
tattaccaaatgtatagtaaatatgtagctctacaatgtgaaaaaaatatattagaaagt
aatatagaaaaatgtagatttatagttctcaaaaaagaactgaaaaatatgctagtactt
ttagaaagcttaaattatattgaagtatcatataatttagaaaatcttaaaaatgaaaaa
gatataaaaactattgaaaattcaataacagaacatataaaaaatgaacgaattatgaat
attaaaaatgaaacatacaaaaataatcatgaagaaaaaaattatgttgttactatgaaa
ggacaaatagcaagtgcaattttaagtgtagatgaactagtaatatcagaattatttttt
tcaaatttttttagtaaatataattatgattatatatgtgcattcttatcatgttttgta
tatgatgaatccacaagtaaagaaatcacaattaatgatccaatattagtagaaggatat
cagcaaattattaaaacagcaaatcatgtagcaacgaaaatgaatgaatgtggaatgaac
ataaatctaaaggattatatcgacaaatttaaatcagcaattatgcccatagctttatta
tgggcacgtggacactcatttgttgaaatattgtcagattcgcaaatatatgaagggtct
ataataagaaccctaagacgattagatgaacttataaggcaaatgatttgtgcatttaga
ggtattaataatgatagcatgtgtgaaacattaacattagccactaataaattaagacgt
ggtatacctttttccccatctctatatttataa
DBGET
integrated database retrieval system
