Pusillibacter faecalis: MM59RIKEN_15440
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Entry
MM59RIKEN_15440 CDS
T07635
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pfaa
Pusillibacter faecalis
Pathway
pfaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM59RIKEN_15440 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfaa03019
]
MM59RIKEN_15440 (rnj)
Messenger RNA biogenesis [BR:
pfaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MM59RIKEN_15440 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCK84225
UniProt:
A0A810QCD1
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Position
1510028..1511686
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AA seq
552 aa
AA seq
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MAEKLKIIPLGGLNEIGKNMTVFEFGGEIIVVDCGMAFPGDDMYGIDSIIPDVTYLIKNR
ARIRGLFITHGHEDHVGAIPYVLKQVNMPIYCTRFTAGLIKLKLEEHGLTKSTKLITVEP
GKSVRAGKFTVEFIHVNHSIADSVAFAIHTHMGTVVHTGDFKIDSTPIDGEVIDLARFGE
LGKEGVLCLCADSTNVERPGFTPSEKTVGATFARQFQNCDERIIVTTFASNVHRIQQVLT
AAAQAGRKVAVTGRSMENMMRVSTELGYMKVPKNTLMDISRIKGLPKNKQVIVTTGSQGE
EMSALYRMAFSTHKQVELGAGDKVIISASAIPGNEVTVGRVINELFRKGVKVVYDRADML
HVSGHACQEELKIIHALTKPRFFVPLHGEQRMLQIHSQVAQQMGMDRNHIAIADNGTVVE
LTTKTLKLGGTVPAGEIYVDGAGVGDVGTVVMRDRKRLAEDGMVVVVLPISAHNGDLLSE
PEIVTRGFIYVKESGDLMKELQSVAQDAAESVSRKRARDDGELRGTVKSAVSSYLFKTTR
RSPMVIPVVTRL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaaattgaaaatcattcccttgggcggactcaatgagatcggcaagaacatg
acggtctttgagttcggcggggagatcatcgtggtggactgcggcatggccttccccggg
gacgacatgtacggcattgactccatcatccccgacgtgacctatctcatcaaaaaccgg
gcccggattcggggcctcttcatcacccacggccacgaggaccacgtgggggccatcccc
tatgtgctcaagcaggtgaacatgcccatctactgcacccgcttcaccgcgggcctcatc
aagctcaagctggaggagcacggtcttacaaagtccaccaagctcatcaccgtggagccg
ggcaagagcgtccgggcgggcaagttcaccgtggagttcatccatgtgaaccactccatc
gcggactccgtggcctttgccatccacacccacatgggaaccgtggtccacaccggcgac
ttcaagatcgactccacccccatcgacggggaggtgatcgacctggcccggttcggggag
ctgggcaaggagggcgttttgtgcctgtgcgccgactccaccaacgtggagcgcccgggc
ttcaccccatcggaaaaaacggtgggagccacctttgcccgccagttccaaaactgcgac
gagcgcatcatcgtcaccaccttcgcctccaacgtccaccggattcagcaggtccttacc
gcggcggcccaggcggggcggaaggtggccgtcaccggccgcagcatggagaacatgatg
cgggtttccacggagctggggtatatgaaggtgcccaagaacaccctcatggacatcagc
cggatcaagggcctgcccaagaacaagcaggtcatcgtcaccaccggctcccagggcgag
gagatgagcgccctgtaccgcatggccttctccacccacaagcaggtggagctgggggcg
ggggacaaggtgattatctccgcctccgccatccccggcaacgaggtcacggtgggccgg
gtcatcaacgagctcttccgcaagggggtcaaggtggtctacgaccgggccgacatgctc
cacgtctccggccacgcctgccaggaggagctgaagatcatccacgccctgaccaagccc
cggtttttcgtccccctccacggcgagcagcggatgctccagatccactcccaggtggcc
cagcagatgggcatggaccgcaaccacatcgccattgccgacaacggcaccgtggtggag
ctgaccaccaagacgctgaaattgggcggcaccgtgcccgccggcgagatctacgtggac
ggcgcgggcgttggcgacgtggggaccgtggtcatgcgggaccgcaagcgcctggctgag
gacggcatggtggtggtggtcctgcccatctccgcccacaacggggacctgctcagcgag
ccggagatcgtcacccggggcttcatctatgtcaaggagtccggggatttgatgaaggag
cttcagagcgtggcccaggacgcggcggagtccgtctcccgcaagcgcgcccgggacgat
ggggagctgcggggcacggtgaagtccgccgtcagcagctacctcttcaaaaccacccgg
agaagtcccatggtcattcccgttgtgaccagactgtaa
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