Phascolarctobacterium faecium: PFJ30894_01054
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Entry
PFJ30894_01054 CDS
T05784
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfac
Phascolarctobacterium faecium
Pathway
pfac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFJ30894_01054 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfac03021
]
PFJ30894_01054 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfac03400
]
PFJ30894_01054 (rpoC)
Enzymes [BR:
pfac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFJ30894_01054 (rpoC)
Transcription machinery [BR:
pfac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFJ30894_01054 (rpoC)
DNA repair and recombination proteins [BR:
pfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFJ30894_01054 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBG63422
LinkDB
All DBs
Position
1065091..1069092
Genome browser
AA seq
1333 aa
AA seq
DB search
MLDVNNFESMRIGLASPEQIRTWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRYKGIVCDKCGVEVTRSKVRRDRMGHIELAAPVSHIWYFKGIPSRMGLILDI
SPRSLEKVLYFANYIVLDAGDTPLVKKQLLSEGEYIEARDKYGSGFKVGMGATAIKALLE
EIDLSALTAELRAELKEVSGQRKIRAVRRLEVCEAFLKSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQCGLPKE
MALELFKPFVMKRLVNSGQATNIKSAKRMVERATTAVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILSEGRAIKLHPLVCTAYNADFDGDQMAVHLPLSAEAQAEARMLMLSVNNIL
APKDGKPVAVPSQDMVLGSYYLTIIKEGAKGEGMRFSSFNEALLAYFHGEVELQARIKIY
IPNKDIYEEPSSEGVSLVTTTVGNAILNEELPVEMRYFHLEDEVNESGKKVKVWHLNKLL
DKKELGRLVAKAHKLYGNLRTAEILDVVKKMGYDNACKAGISIAVSDIKIPPEKAEILAA
TEKEIDKTERMFRRGLMSEDERYRKVIELWGKATDDVTNKLMSSTMDPFNSVYMMANSGA
RGNTQQIRQLAGMRGLMADPSGRIIDRPIKANFREGLTVLEYFISTHGARKGLADTALRT
ADSGYLTRRLVDVAQDVIVREDDCDIVGINLVKERGRLCKATLGSSQNKLREIVIGRNLA
AGITDPATGELIVEADTIVTEDLYNKLAAAKVMEVVLYATDDMSGEETETIQINISDEQS
NAVLKEAMMHHFDGREVAEDVVAADGTVLIEAGATYDEAIIDAILANGTVRDVKVRNNAI
EGIEIESITEGKNKQTVIESLRDRIVGRYLAEDILDNDGNICYHINDYVTEDMADQISSL
REKVKIRSVLNCKAKVGVCRKCYGRNLATGRKVEVGEAVGTIAAQSIGEPGTQLTMRTFH
TGGVAGDDITQGLPRVEELFEARKPKHPGLLTENAGTVHIGEENGIRKVTVTSEDGEQIY
TIPYGSKLAVTEGMVIAVGDRLTEGSLNPHDILRISGVRATQRYLVQQVLGVYKSQGVEI
NDKHIEVMVRQMMRKIRIEEAGDTYMLPGEYIDVAEFEAQNAEMLEKGLQPAEGRPVLLG
ITKASLATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENVIIGKLIPAGTGMNRYRD
IKIKYNTTNSDQQ
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaataattttgagtctatgcgtatcggtctggcttcaccggaacaaatc
agaacttggtcctatggcgaagtaaagaaaccggaaactattaactacagaactttgaaa
ccggaacgcgacggtttgttctgtgaaagaatatttggacctaccaaagactgggaatgc
cattgcggtaaatacaaaagaattcgttataaaggtatcgtctgcgataagtgcggcgtt
gaagttacccgctccaaagttcgtcgtgaccgtatgggtcatatcgaactggctgcacct
gtttctcatatctggtactttaagggtatcccgagccggatgggattgattcttgatatt
tcgcccaggtcgctggaaaaagtactgtattttgctaattacatcgtacttgatgccggc
gatactcctttggtgaaaaaacagttgttgagcgaaggcgaatatatcgaagcccgcgac
aaatatggcagcggttttaaagttggtatgggcgctactgctatcaaagcactgctggaa
gagatcgatttatctgcattaactgcggaactgcgtgctgaattgaaagaggtaagcgga
caaagaaaaattcgtgccgtacgccgtttagaagtctgtgaagctttcctgaaatcaggc
aatcgccctgaatggatgattttggatgttgttcctgtaattcctccggaactgcgtccg
atggtacaattagacggcggacgttttgcgacttctgaccttaatgatttgtatcgtcgt
gtcatcaaccgtaataatcggttaaaaagattgcttgaactcaatgctcctgatatcatc
gtacgtaatgaaaaacgtatgcttcaggaagctgttgatgctttgattgacaacggacgc
cgtggccgtccagtaacaggtcctggtaatcgtcctttaaaatctctttctgatatgctg
aaaggtaaacaaggtcgtttccgtcagaacctgttaggtaaacgtgttgactattccggt
cgttctgttattgtagtagggcctgaattgaaaatgcatcaatgtggtctgcctaaagaa
atggcgctggaattgtttaagccttttgtcatgaaacgcttggttaacagcggtcaggct
actaatatcaaaagtgcaaaacgcatggtagaacgtgctactactgctgtttgggatgtt
ttggaagatgtaatcaaagaacatcctgtgcttttgaaccgtgcaccgactttgcatagg
cttggtatccaggcttttgagccgatcttgtctgaagggcgtgcaatcaaactgcatcct
ctggtatgcactgcatacaatgccgactttgacggtgaccaaatggcagtccatctgccg
ctgtctgctgaagcacaggccgaggccaggatgctgatgctctcggttaataatattctg
gccccgaaagacggaaaacctgttgctgtaccttcgcaggatatggttttaggttcatat
tacctgacaatcatcaaagaaggcgctaaaggcgaagggatgcgtttcagcagctttaat
gaagctttgctggcttatttccacggtgaagttgaactgcaggcacgtattaagatttat
atcccgaacaaggatatttatgaagaaccttccagcgaaggggtaagtctggtaacgact
actgtcggcaatgcgatacttaatgaagaactgccggttgaaatgcggtacttccattta
gaagatgaagtaaacgaatccggtaaaaaagttaaagtatggcatttgaataaactgctt
gataaaaaagaattgggacgtcttgttgctaaggcacataaattgtatggcaatttgcgt
acggctgaaatccttgacgttgttaagaaaatgggttatgacaatgcttgtaaagcaggt
atttccattgctgtttccgatatcaaaattccgcctgaaaaggcagagattttggctgct
acggaaaaagaaatcgataaaactgagcgtatgttccgtcgtggtttgatgagtgaggac
gaacgttatcgcaaggttatcgaactttggggcaaggctactgatgatgtaaccaataag
cttatgtcgtccacaatggatccgtttaactctgtgtatatgatggctaattctggtgcc
cgtggtaatacgcagcagatccgtcagctggctggtatgcgtggtttgatggcagatcct
tccggtcgtatcattgaccgaccgatcaaggctaatttccgtgaaggcctgactgttttg
gaatactttatttcaactcatggtgctcgtaaaggtttggctgatacagcattgcgtact
gctgactccggttatctgacccgtcgtttggttgacgttgctcaggatgtgatcgtacgt
gaagatgactgtgatatcgttggtatcaatcttgtaaaagagcgcggacgtctttgcaaa
gcaaccttgggttccagtcagaataaactgcgcgagattgttattggacgtaatttggca
gctggtattactgatcctgctacaggtgagttaattgtcgaagctgatacgattgtgaca
gaagatttgtataacaaattagctgcagcaaaggtcatggaagtagttttatatgctact
gacgatatgagcggagaagaaaccgagacaattcagattaatatcagcgatgaacaatct
aatgctgtattgaaagaagcaatgatgcatcattttgatggccgagaagttgctgaagat
gttgtggcagctgatggtacagtgctgatcgaagccggtgcgacttatgacgaagcaatt
atcgacgctattttggctaatggtactgtccgcgatgttaaagttcgcaataatgcaatc
gaaggtattgagattgaatcgattaccgaaggtaaaaataaacaaactgttattgaatct
ttgcgcgaccgtatcgtaggacgttatcttgctgaagatattttggataatgatggtaat
atctgttaccatatcaatgattatgttactgaagatatggcggatcagatttcttcgttg
cgtgaaaaagtaaaaatccgttccgtactcaattgcaaagccaaagtcggcgtttgccgt
aaatgttatggccgtaatctggctacaggtagaaaagttgaagttggcgaagctgttggt
actattgctgctcaatccattggtgaacctggtactcagctcactatgcgtacgttccac
accggtggcgtagcaggtgacgatatcactcagggcttaccccgtgttgaagagctgttt
gaagcccgtaaaccgaaacatcctggtttacttactgaaaatgctggtactgtacacatt
ggtgaagaaaacggcatccgtaaagtaactgttaccagtgaagatggggagcagatttat
actattccttatgggtctaaactcgctgttaccgagggcatggtaattgctgttggcgat
cgtctgactgaagggtcactcaatccgcatgatattttgcgtatcagtggtgtgcgtgct
actcagcgttatctggttcaacaggtattgggagtttataaatctcagggtgttgagatt
aacgataagcatatcgaagttatggttcgccaaatgatgcgtaaaatccgcatcgaagaa
gctggcgatacttatatgctgccgggtgaatatatcgatgttgcagaatttgaagcacag
aatgcggaaatgctggaaaaaggcttacagcctgcagaaggacgtccggtgctgcttggt
attaccaaagcatctctggctactgattctttcctgtctgctgcatccttccaggaaact
acacgcgtgctgacagatgccgcaatcaaaggcaaagttgatccgcttttaggacttaaa
gaaaatgttatcattggtaaacttattccggctggtaccggtatgaatcgttatcgtgat
atcaaaatcaaatataacactactaatagcgaccaacagtaa
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integrated database retrieval system
