Phascolarctobacterium faecium: PFJ30894_01370
Help
Entry
PFJ30894_01370 CDS
T05784
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfac
Phascolarctobacterium faecium
Pathway
pfac03030
DNA replication
pfac03430
Mismatch repair
pfac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFJ30894_01370 (dnaE)
03430 Mismatch repair
PFJ30894_01370 (dnaE)
03440 Homologous recombination
PFJ30894_01370 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfac03032
]
PFJ30894_01370 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfac03400
]
PFJ30894_01370 (dnaE)
Enzymes [BR:
pfac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFJ30894_01370 (dnaE)
DNA replication proteins [BR:
pfac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFJ30894_01370 (dnaE)
DNA repair and recombination proteins [BR:
pfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFJ30894_01370 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
BBG63736
LinkDB
All DBs
Position
1366816..1370220
Genome browser
AA seq
1134 aa
AA seq
DB search
MSVNFTHLHVHTQYSLLDGAAKISDLVAYAKEIGMKSLAITDHGVMYGVVDFYQEAMKQG
IKPVIGCEVYLTNGSRFEKTNRDGMYHLILLAENDEGYHNLMKLVSLGHLEGFYYKPRID
KDILRQYSKGIICMSACIAGEIPVQILRGNLEGAENSLKDYLDIFGKDNFFLEIQDHDLE
EEHTVNTELKRLAKKYDLGLVATNDSHYVKREDADAQDVLLCIQTTSTVDDPKRMKFPND
QFYLKSEAEMREKFGDCPEALENTAKIAERCNVELSFGHLLLPEFPIPNGLSAEEYLRKL
CLDGMPGRYPEPTQQVLDRLEYELGIINKMGYDCYFLIVWDFISYSRRNDIPVGPGRGSA
AGSIVAYLLGITNIDPLKYDLLFERFLNPERVSMPDIDTDFCYEKRQQVLDYIINRYGQE
KVAQIITFGTLQARAAVRDVGRALEMPYSMVDNVAKLIPRDLGITLERALEASNELRSLY
ENDANIKRLIDLAQSVEGMPRNSGTHAAGVVIAPDDLKKYVPLQLSNENFITTEYDKDKI
ESLGLLKMDLLGLRTLTVIGDAIKFIYETTGDKLDIDKIPLDDEATCSMLRKGDTQGVFQ
LESGGMTKLVMDLGPESFEDLIPLVALYRPGPLGTGMVEDFIAGRHGEKTAEMLHPLLEP
VLKDTFGVILYQEQVMQITSVLAGFSLGQADILRRAMGKKKAKELDSMREAFIDGAQQKH
GISPQLSSEIFALLQHFAGYGFNKSHSAAYALVAYQTAYLKAHWPAEFMAAFLTSVISDS
EKLSWYISVCRSMGLKILPPDVNESGRSFSVNKDRVIRFGLAGVKNVGENAIGSILQARK
EGPFKSLMDFCKRVDNRAVNKRMLENLIKCGAMDSFGYKRSELLAVAEQAMDMGSNYQKD
YQSGQMGLFGDDSFADVNELRIPELEEIPKRTILQYEKELIGFYVTGNPLDAYVGSLYYY
TPLRKISDASEVLDGKYFSVAGIISDCRIRNTRQGDSMAILTLEDFNGKMEIVVFPKVYR
DAARLLYQENAISVEGKLSIDERERKIQALKIKPLQEVPPDLHIKIMKKDENGIVQKGLK
QIFESFSGDTPVYLHLIDSGKMIKVERCFWVDGKNAGVYQALDDLLGENWYLKG
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtaaattttacacatctgcatgtccatactcaatacagcctgcttgacggtgcc
gcaaaaataagtgatctggttgcttatgctaaagaaatcggaatgaagagcctggcgata
acagatcatggtgtaatgtatggtgtcgttgatttttatcaggaggcaatgaagcaggga
atcaagcctgttataggctgtgaagtatatttgacaaatggatcacgatttgaaaaaact
aaccgtgatgggatgtaccatttgattttactggcagagaatgacgaaggttatcacaat
ctgatgaagctggtttcacttggacatttagaagggttttactataaacctagaattgat
aaagatattctaagacaatacagtaaaggtattatctgcatgagcgcatgcattgccggt
gagattcctgtgcaaatactgcgaggcaatttagaaggagctgaaaacagtttaaaggat
tatctggacattttcgggaaagacaatttttttctggaaattcaggatcatgaccttgaa
gaagaacatactgttaatactgaactgaaacgcctggcaaaaaaatatgatcttggttta
gtggctactaatgattctcattatgtgaagcgcgaagatgcagatgcacaggatgtattg
ctgtgtattcagacaacaagtactgtagatgatcctaaaagaatgaaatttcctaatgat
caattttatttaaaaagtgaagctgagatgcgcgaaaagttcggtgattgtcctgaagct
ttagaaaatacagcgaagatagcagagcgctgcaacgtggaattgagttttggtcattta
ttgctgccggaattccctattccaaatggattatcggcagaggaatatttgcgtaagctg
tgtttagatgggatgccggggaggtatcctgagccgacgcagcaggttttagataggctg
gaatatgaattaggtattatcaataaaatgggctatgactgttactttctgattgtttgg
gattttataagttacagccgcagaaatgacatacctgtaggacctggccgcggaagtgcg
gcaggcagtattgtcgcttatcttttagggattactaatattgatccgctgaaatatgat
ttgctgtttgaacgtttcttaaatcctgaacgtgtaagtatgcctgatatagatacagat
ttctgttatgaaaaaaggcagcaggttctggattacattattaatcgttatggacaggag
aaggttgcccagatcataacttttggtaccttacaggctcgcgcggcggttcgtgatgtt
ggcagagcgttggaaatgccttacagcatggtggataatgtagcaaaacttattccgcgt
gatttgggtattacattagagagagcgctggaggccagtaatgagctgagaagtttatat
gaaaacgatgcgaacatcaaacgcctgattgatcttgctcaaagcgtggaaggcatgccg
cgtaattcaggtactcatgcggcgggagttgttattgccccggatgatttgaaaaagtat
gtgccgctgcagttgtcgaatgaaaattttattacaactgaatatgataaagataagatt
gaaagtctcggacttttaaagatggatcttttagggctgcgtactttgacagtaattggt
gatgcaatcaagtttatttatgaaactactggtgataaacttgatattgataaaattcct
cttgatgatgaagcaacgtgcagcatgctgagaaagggcgatactcaaggggtatttcag
cttgaatcaggcggaatgacgaaactggttatggatttgggaccggaaagttttgaagat
cttattcctttagttgcattgtatcgtcctggaccattaggaacgggaatggtagaagat
tttattgcaggacgtcatggtgaaaaaactgcagagatgctgcatcctttattggaaccg
gttttaaaagatacttttggcgttattctttatcaggaacaggttatgcagatcacttcc
gttctggcaggcttcagcctcgggcaggcagatattctgcggcgggctatgggcaagaaa
aaggctaaggaactggattctatgcgtgaagcctttattgatggagctcaacaaaaacat
ggtatcagcccgcagctgagcagtgaaatttttgctctcctacagcattttgccggttat
gggttcaataaatcgcactctgccgcgtacgcattagttgcttatcagactgcttatctt
aaagcacactggcctgcagaatttatggcagcttttttgaccagtgtcatcagtgacagc
gaaaagctgagctggtatataagtgtgtgccgcagtatggggctgaagattttaccgccg
gatgttaatgaaagtggccgaagcttttctgtaaataaagacagggttatccgttttggt
ttagcaggtgtgaaaaatgtaggtgaaaatgcgatcggcagcattttacaggcacgtaaa
gagggaccttttaaatctttgatggatttctgtaaacgggtggataatagagctgttaat
aaacgaatgttggaaaatttaataaaatgtggcgcgatggattcctttggttataaacgt
tccgagttgttagccgttgcagaacaggctatggacatgggcagtaattatcaaaaagat
tatcagagcggacagatggggctatttggtgatgacagttttgctgatgttaatgagcta
agaatacctgaattggaagaaatccccaaacgcacgattttgcaatatgagaaggaactg
atcggtttttatgtaaccggtaatcctttagacgcttatgtcggttccttgtattattac
actccattgcgtaaaatatcagatgccagtgaagtgcttgacggtaaatatttcagtgtt
gccggcataatttcggattgccggataagaaatacgcgtcagggtgacagtatggcgatt
ttaacattagaagattttaacggaaagatggagattgtggtttttccaaaagtttaccgt
gacgctgccaggctgctttatcaggagaatgcaatcagcgtggaaggaaaactcagtatc
gatgaacgtgaacgaaaaattcaggcgttaaagattaaacctctgcaggaagtgcctcct
gatttacatataaagatcatgaaaaaggatgaaaatggtattgtccaaaaaggcttaaaa
cagatttttgaaagtttttcgggcgatacacctgtctatctgcatctgatagattcagga
aagatgatcaaagtggagcgctgcttttgggtggatgggaagaatgccggtgtttaccag
gctttagatgatttattgggagaaaattggtatttaaaggggtga
DBGET
integrated database retrieval system
