Phascolarctobacterium faecium: PFJ30894_01403
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Entry
PFJ30894_01403 CDS
T05784
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pfac
Phascolarctobacterium faecium
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfac03400
]
PFJ30894_01403 (addB)
Enzymes [BR:
pfac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFJ30894_01403 (addB)
DNA repair and recombination proteins [BR:
pfac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PFJ30894_01403 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
ADDB_N
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
BBG63769
LinkDB
All DBs
Position
1400398..1403475
Genome browser
AA seq
1025 aa
AA seq
DB search
MIDLYTVPLGATARDFFSAEAENKYSYDEALLVLPSRLLVNHARRSGRAQAVNFEYLPNR
IVALNRQLLDLPPEVKLEMISRRTQELLVGDLLHQLAKLQGLDYFSKLADKEGFVKAVTG
LLGQLSRSGSTQEEITTALLEWEQRNPAYVMKDREVAALYNLYRNKLKQKNWYDVEGLYR
LAIAVLERPQAKLPWQQLYFSEFYHFDALQRLLIKSLSRHCQISIGLMYEPKRPEIFAAV
ERSFGYLSGFAQLHDLHMEGSVRKPDLQHLTAKLGAGSCQTLAVADSINFIESGDSEGEL
RAVLRSIKAKLQHGAAYNDFLVAVRDFKTYSGIRAVCDEYGIPVTLPKIASLSAQPVCEF
LRLLLNVAAGGSEAIAAYWRLLKCGVVKLVYSFDGEQLNRLKQEYLYNDLRQLRKAVRDK
ADANENKQWSADLGELELLLDKVQRRDTAAAYGETFKTILEALELPVKAGENYKNGRADL
LEVKNIVETVRQLSEVLDTLSEDYQNGGLESVPLKAEEYSQLLISACSERQIILTAADSE
GILFGEAANLQGLLFKHVYIMGLREGEFPRSKNENWIYNDRERAELSGVGVELDNTACAY
AEDKFFFAAVAAMATETLTLSWYSDDTAGASAYIEDVERLYAAGCITRSRAGRIGWQEAL
SEQELLLGITQKDTCHNWLLERLGADWTLRSSIERIREQGDSVYKGVFEDVQLQRAINEA
VGGLFSASHLETYAQCPYRFLLSYVWKQQQYEELTETVEPAVEGSLLHDVLARFMAGHLH
EKLTKYPPTELISQLDDIMTSVCDEYITGKKIAVTDFWPSQRRKLNLLLRRWLQRELVYQ
KKWEPFVPVKIEWDFGRNGSAPLVLEVNGGKIYLNGRIDRIDSDGNGIFVTDYKRSQTPS
GSELTEGLDLQIPVYLMALAALEPQSKVLGGGYYSLKEAKRKGGFAMQTLGKTPFTTNNK
PFSDAEDQWLAFADFCRTTVRGYINTLRQGNFPPAPRKNCPEYCPGKDICRAYGELAAEG
GEENV
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatttatatacagtacctttaggtgctacggccagggattttttttcggcagag
gcagaaaacaaatatagctatgatgaagcgttgctggtgcttccaagcagattgcttgtg
aatcatgcccgccggtcaggcagggcgcaggcagttaattttgaatatctgcccaaccgt
atcgtagcattaaacagacagctgctggatttgccgccggaagtaaaattggaaatgatt
tcccggaggacacaggaactgcttgtgggtgatttgctgcaccagctggctaaattgcag
ggcctggactattttagtaaactggcagataaagaaggtttcgttaaagctgttaccggg
cttttgggtcagctttcacgcagtgggtcgacacaggaagaaattactacggcgctgctg
gaatgggaacagcgcaatcctgcctatgtgatgaaggaccgtgaagtagcggcactttat
aacctttatcgcaataagctaaaacaaaaaaactggtatgatgtagagggtttataccgg
ttagcaatagcggttttagaaagaccgcaggccaagctgccttggcagcagttatatttc
agcgaattttatcattttgatgctttgcagcgtttgcttataaaatctttgtcacggcat
tgtcagatcagtatcggtttgatgtacgagcccaaacgaccggaaatatttgctgctgta
gagcggagtttcggttatttaagcggttttgctcagctgcatgatctgcatatggaaggt
tcagtacgaaagcctgatctgcagcacttaacggctaagttaggtgctggaagctgccag
acgctggctgttgctgacagtataaattttattgaatcaggagatagtgaaggtgaactg
cgggcagtgctgcgttctataaaagctaagctgcagcatggcgccgcttataatgatttt
ttggttgctgtacgtgattttaagacttacagcggtatcagagctgtttgtgatgaatat
ggtatacctgttactttacctaagatcgcttctctgagtgctcagcctgtctgtgaattt
ctgcgtttacttttgaacgtagctgccggcggcagtgaagctatcgctgcttactggcgt
ctgttaaaatgcggcgttgtaaagctggtctatagctttgacggagagcagctcaacaga
ttgaaacaggaatatttatataatgatctgcggcaactgcgtaaggcagttcgtgataag
gctgatgccaatgaaaataagcagtggtcagctgatttaggcgaacttgagttgctgctg
gacaaggtgcagcggcgagatacggcggctgcttatggagaaacatttaaaacaatatta
gaagctttggagctgcctgttaaggctggcgaaaattataaaaatggcagggcagatctg
cttgaggttaaaaatatagtagagacagtacggcaattatccgaagttttggatacactg
agtgaagattatcagaatggcggtttggaaagtgtgcctttaaaagcggaggaatacagc
cagctgctgatttctgcctgttccgaacggcaaatcattttaacagcggccgacagtgaa
ggtattttattcggagaagctgctaatctgcaggggctgctgttcaagcatgtttacatt
atgggactgcgcgaaggtgagtttccgcgcagtaaaaatgaaaactggatctacaatgac
agagaacgggccgaattgagcggtgtcggcgtggaattggataatactgcgtgtgcttat
gctgaggataaattcttttttgccgcagtggcagcaatggcaacagaaactctgactttg
agctggtacagcgacgatacagctggcgcttccgcatatattgaagatgtggaacgatta
tatgcagccgggtgtataaccagaagcagagctggacgtataggctggcaggaggctttg
tctgagcaggagctgctgctggggattacccaaaaagatacctgccataattggttgttg
gagcggttgggagcagattggacactgcgcagcagtatcgaaagaattcgtgagcaaggc
gatagtgtttataagggagtttttgaagacgtacagctgcagcgggctattaatgaagct
gttggcggtttattcagtgcgtcgcatttagaaacctatgctcaatgcccatacaggttt
ttactaagctatgtctggaaacagcagcaatatgaagaacttacagaaacggtggagcct
gctgttgaaggcagcctgctgcatgatgttttagcacgatttatggcgggacatttgcac
gaaaagcttaccaaatatccgccgactgagcttataagtcagcttgatgacattatgacg
tcagtttgtgatgaatatattactgggaaaaagattgccgttacagatttctggccttcg
cagcgtcggaagctgaatttgctgctgcgccgctggctgcagcgggagcttgtataccag
aaaaaatgggaaccttttgtaccagtaaaaatagaatgggattttgggcgtaacggcagt
gctccgttggtgctggaggtcaacggcggaaaaatttatttgaacggacgtatcgaccgt
atcgacagtgacggtaatggtatttttgttacggattataaacgcagccaaactccgtcg
ggcagtgagctgacagaaggactggatttgcagattccggtatatcttatggcgcttgca
gccttagagcctcagagcaaagtgcttggcggcggttactattcactaaaggaagcgaaa
cgcaaaggcggttttgccatgcagactttaggaaaaacgccttttacaacaaataataaa
ccgttcagtgatgcagaagatcaatggctggcttttgcagatttttgccgtacgactgtc
agaggatatatcaataccttgcggcaggggaatttcccgccggcgccgcgtaaaaactgc
cctgagtattgtcctgggaaggatatttgccgggcctacggcgaactggcagcagaaggc
ggtgaagaaaatgtttga
DBGET
integrated database retrieval system
