Phascolarctobacterium faecium: PFJ30894_01673
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Entry
PFJ30894_01673 CDS
T05784
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfac
Phascolarctobacterium faecium
Pathway
pfac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFJ30894_01673 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfac03019
]
PFJ30894_01673 (cshA_1)
03009 Ribosome biogenesis [BR:
pfac03009
]
PFJ30894_01673 (cshA_1)
Enzymes [BR:
pfac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFJ30894_01673 (cshA_1)
Messenger RNA biogenesis [BR:
pfac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFJ30894_01673 (cshA_1)
Ribosome biogenesis [BR:
pfac03009
]
Prokaryotic type
rRNA helicases
PFJ30894_01673 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_19
AAA_30
UNC80
UBA_7
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBG64034
LinkDB
All DBs
Position
complement(1677082..1678674)
Genome browser
AA seq
530 aa
AA seq
DB search
MTTNVQEMFGSLLLDKKIVASLTAMGFEEPSPIQEQTIPLVLEGSDVIGQAQTGTGKTAA
FGIPVVQSITDHRHIQALIMTPTRELAIQVAEEIGKIGRTSKIKALPVYGGQPIDRQIRA
LRSGVQIVIGTPGRLIDHINRKTIKLDHIKFLVLDEADEMLDMGFVDDMEEIMKNLPAER
QTLLFSATMPRPILSLTKKYMKAPKNVTISKEELTVPLIDQYYFETKDKIEGLCRLLDAE
IDGKLIIFCRTKKGVDDLAIALGSRGYMAEGLHGDLSQTQRDRVMKKFRDGTADILIATD
VAARGIDIDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLIERT
TKTKITRRQLPTTANVIERQREMIVSKMQSVLDQSNYHDYMPIAASLLKEYDAEDVVAAA
LKLMQEGNKALEASPEDILAKDLSNTGGRPGMVRLFMNIGRSQKVTVQDIVRTIAIEADI
PAKEVGLINIYDKFTFVEVPEDMAEKVLGVMHKNTIKGYKINVEPARVRQ
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgacaactaatgtacaagaaatgttcggcagcttactgctggataaaaaaatcgtagca
tctttaacagctatgggttttgaagaaccgtctccgatccaggagcaaactattccttta
gtactagagggtagcgatgttataggtcaggcacaaactggtactggtaaaacagccgcc
tttggtattccggtcgtacaaagtattaccgatcatcgccatattcaagctctgattatg
actccaacccgtgaactggcaatccaggttgcagaagagattggtaaaattggacgtact
tctaaaattaaagcattacctgtttatggcggacagcctatcgaccgtcagatcagagct
ttacgcagcggcgtgcaaatagttattggtactccaggccgtttgattgatcatataaac
cgtaaaactatcaaacttgatcatattaaatttttagtcctggatgaagctgatgaaatg
ttggatatgggctttgtagacgatatggaagaaattatgaaaaatcttcctgcagaacgt
caaaccttgttgttttcagcaactatgccaagaccgatcctaagcctcacaaaaaaatat
atgaaggctcctaaaaatgttacgatcagcaaagaggaactcacagttccgcttatcgat
caatattattttgaaactaaggataagatcgaaggtttatgtcgtttgcttgatgcagaa
atagatggtaagctgattattttctgccgcactaaaaaaggtgttgatgatctggctatt
gcattgggaagccgcggttatatggctgaaggtttacatggcgatttaagccaaactcaa
cgtgatcgtgttatgaagaaattccgtgacggaacagctgatattcttatcgctacggac
gtcgctgcccgcggcatagatattgataatattactcatgttatcaattttgatattcct
caggatccggaaagctatgttcatcgtattggacgtaccggccgtgcaggtaatactggt
gttgctatgacctttattacaccgcgtgaattccgtcagttgaaacttatcgaacgcact
actaaaaccaaaataacacgtcgtcaattgccgactacagccaatgttattgagcgtcag
cgtgaaatgatcgtttccaaaatgcagagtgtgctggatcagtctaactatcatgattat
atgcctattgcagcaagcttattaaaagaatatgatgctgaagatgtggttgctgctgcg
ttaaaactgatgcaggaaggtaataaagctttagaagcttcgcctgaagatattctggcg
aaagatttaagtaatactggtggtcgtcctggcatggttcgtcttttcatgaatattgga
cgcagccaaaaagttactgttcaggatatagttcgaactattgctattgaagctgatatt
cctgccaaagaagtaggtttgatcaatatttatgacaagtttacctttgtagaagtccca
gaagatatggccgaaaaagttttgggtgtaatgcacaaaaacacgattaaaggctataaa
ataaatgtcgagccggcacgcgttcgtcagtaa
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