Planococcus faecalis: AJGP001_07720
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Entry
AJGP001_07720 CDS
T04955
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pfae
Planococcus faecalis
Brite
KEGG Orthology (KO) [BR:
pfae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfae03019
]
AJGP001_07720
03009 Ribosome biogenesis [BR:
pfae03009
]
AJGP001_07720
Enzymes [BR:
pfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AJGP001_07720
Messenger RNA biogenesis [BR:
pfae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AJGP001_07720
Ribosome biogenesis [BR:
pfae03009
]
Prokaryotic type
rRNA helicases
AJGP001_07720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AQU79158
LinkDB
All DBs
Position
1541905..1543200
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AA seq
431 aa
AA seq
DB search
MTKFNEYPFKPFLLEAVEKLGFTEPTKIQQEMMPHILKGTSAIGQSHTGTGKTHSFIIPI
VERIDVSKQEVQAVISAPTRELAMQIFNELQKLVIGSGIEVKSFIGGTDKQRSINKLKTQ
PHIVVGTPGRLRDLVKENALLVHTGKILVIDEADLAFDLGFIEEIDQVAGKMKEDLEMYV
FSATIPEKLKPFLKKYMESPVHVKIGDKRPTAEGLDFYLVPVRSKKKMERLQDVMKVINP
YLAIIFVNTRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYIVATDLA
ARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGMKGLAITLFKPEEDDAIVRIEKMGI
PFQQKDIVKGEFVDLKERHSRTTRIKKTDAADAKAKTMVHKPKKVRPMYKKKMKWKMDEI
KKMERRKNRKK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattcaacgaatatccattcaaaccgttcctattagaagcggtagaaaaactc
gggtttacagaaccgacaaagattcaacaggaaatgatgccccatatattgaaaggcaca
agtgcaattggccaatcccatacaggaactggaaaaacgcatagtttcattattccaatt
gtagaacgtatcgacgtcagcaaacaggaagtgcaggcggtaatctcagcaccgacgcgt
gaacttgcaatgcagatcttcaatgagttgcaaaaactagttattggatctggcatagaa
gtaaaatcgtttatcggtgggacagacaagcagcgttcaattaacaaattaaaaacacag
ccccatatcgtagtcggaactcctggtcggttaagagacttggtgaaagaaaacgcattg
ttggtacacacaggtaaaatccttgtaattgatgaagcagacttagcttttgatcttggc
tttatcgaagaaattgaccaagttgctggaaaaatgaaagaagacctggaaatgtatgtc
ttttcagcaacaattccagaaaagttaaaaccgttcttaaaaaaatacatggaatcacca
gttcatgtcaaaattggcgataaacgcccaactgcagaagggttagacttttacttggtc
cctgttcgtagtaagaagaaaatggagcgcttgcaagatgtgatgaaagtcatcaaccct
tatttagcgatcatctttgttaatactcgtacaaacgccgattatgttgccgatcaatta
gcaaaagaaggcattcgtgttgggcgtgtacacggcgacttggcaccgcgtgaacgcgtc
aaaatgatgcgtcaaattcgcgacttggagtatcaatacatcgtagcgacagatcttgct
gcacgtggaattgatattcaaggcgtcagccacgtaatcaactacgaattgccggaagac
ctggagttctttattcaccgtgtgggacgtacagctcgcgctgggatgaaagggctagcg
attacgctattcaagccagaggaagacgatgcgattgttcgtattgagaaaatgggcatt
ccgttccaacaaaaagatattgtgaaaggcgaattcgttgatttaaaagaacgtcacagc
cggacaacgcgcattaaaaagacggacgcagccgatgccaaagcaaaaacaatggttcat
aagccgaaaaaagtaagaccgatgtacaaaaagaagatgaagtggaaaatggacgaaatc
aaaaaaatggaacgacgtaaaaatcgcaaaaagtaa
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