Parabacteroides faecis: NXY11_03420
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Entry
NXY11_03420 CDS
T08643
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfai
Parabacteroides faecis
Pathway
pfai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NXY11_03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfai03019
]
NXY11_03420
Enzymes [BR:
pfai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NXY11_03420
Messenger RNA biogenesis [BR:
pfai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NXY11_03420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
P-loop_SecA
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
UVQ47304
LinkDB
All DBs
Position
801389..802672
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AA seq
427 aa
AA seq
DB search
MTFEQLQLIEPIRKALREEGYTIPTPIQAEAIPYVLDGYDLLGCAQTGTGKTAAFSIPIL
QNLYNERQNGFARGIKALILTPTRELAIQIGESFAAYGKYTKLKHTVIFGGVGQKPQTDA
LQRGVDILIATPGRLLDLINQGFVNLKTLDYFVLDEADRMLDMGFIHDIKRILPLLPKKR
QSLFFSATMPPEIERLAGTILVEPKKVEVTPASSTVDKIDQWVYFVEKAEKVSLLTHLLK
DSALESVLVFTRTKHGADKVARVLAKANIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA
TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGRSGVAYSFCDAEEVPYLKDIQ
KLIGKQIPVAGGNEFETAEVKAAVADKKEAIKQESKRRNMFGSKRDGSYWRNKKRASNEN
QKTAKKK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaacaattacaactgatcgagccgatacgtaaggctctcagagaagaaggt
tataccattccaacccctatacaagcagaagcgattccctatgtgttagatggatacgat
ttattaggttgcgcacagaccggaacgggtaaaactgccgcattttcaatccctatttta
caaaatctgtataatgaacgtcagaatgggtttgcacgtggtatcaaggctttgatactg
acaccgacccgtgaactggctatccagatcggggaaagttttgccgcttatgggaaatat
accaaactgaaacatacggttatattcggtggagtaggacagaagccccagacggatgcg
ttgcaacggggcgtggatatactgatcgcgacaccgggacgtttgctggatttgatcaac
cagggttttgtcaacctgaagacattggattatttcgtgttggatgaggccgaccgtatg
ctggatatgggatttatccatgatatcaagcgaatcctgcctttattgcctaagaaacgc
cagtcgttgtttttctcggctaccatgccaccggagatagaacgtcttgccggaacgatc
ttggtggaaccgaagaaggtggaggttactccggcttcgtcgacggtcgataagatcgac
cagtgggtttattttgtggaaaaggcggagaaggtaagtctgctaactcatttgctgaaa
gattccgctttggagtcggttctggtatttacccgtacgaaacatggagcggacaaagtg
gcgcgtgtcctggcaaaagcaaatatcggagcggaggctattcatggcaataagagccag
acggcccgccagcgtgcattgaccaattttaaagatcatacgacccgtgtactgatcgca
acggatattgctgcccgggggatcgacgtggatcatcttacgcatgtgattaattacgaa
ttgccgaatgtgccggaaacgtatgtacaccgtatcggacgtacaggccgtgcaggacgt
agcggagtggcttattctttctgtgatgcggaagaagtaccgtacttgaaagatatacag
aaactgatcggcaagcagattcctgttgccggcgggaatgagtttgaaacggcggaagta
aaagcagccgtggccgataagaaagaagccatcaaacaggagtccaaacgccggaatatg
ttcggcagcaaacgcgatggcagctactggaggaataagaaacgggcgtctaacgaaaat
caaaaaacagctaaaaagaaataa
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