Parabacteroides faecis: NXY11_04885
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Entry
NXY11_04885 CDS
T08643
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfai
Parabacteroides faecis
Pathway
pfai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NXY11_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfai03019
]
NXY11_04885
Enzymes [BR:
pfai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NXY11_04885
Messenger RNA biogenesis [BR:
pfai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NXY11_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
SNF2-rel_dom
adh_short
AAA_7
Motif
Other DBs
NCBI-ProteinID:
UVQ47580
LinkDB
All DBs
Position
complement(1153646..1154941)
Genome browser
AA seq
431 aa
AA seq
DB search
MRFDELDLEEAVLDGLDAMNFQETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPLI
NELSKGNHPDNAVNAVIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGVAWEQQKR
GMEMGADIVIATPGRLLSHLKLGTVDLSQVSYFVLDEADRMLDMGFYDDIMQVYKQLPPT
CQTIMFSATMPPKIRTLAKTILKNPEEVKIAISRPPETIMQTAYICYDPQKLKILEDLFQ
QSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGHIDILVA
TDVVSRGIDINDIKLVVNYDIPHDPEDYVHRIGRTARGTGGEGLAITFISIEEQAQFKRI
ENFLEKEVYKIPIDPKFGETPLYEPEKYGNMRRGRGRPRKEGNNGGGRNQGNRPGGKPNN
GNRRGRPKKES
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgacgaattggatttggaagaggccgtattagacggactcgatgctatgaat
tttcaggaaacgacacctgtacaggaattaacgattccggtaatattagaagggaaggat
attatcgcctgtgcacaaaccggcacaggaaagacggcggcatatgtactgcctctgatc
aatgaattaagtaagggaaatcatcctgacaatgccgttaatgccgttattatggcacca
acccgtgaactggcccaacagatagaccagcagatagaaggattcacttatttcgttccg
gtatcggctgtggccgtatacggcggaactgacggggtagcctgggaacaacaaaaacga
ggtatggaaatgggtgccgatattgttatcgccactccgggacgtttattatcgcacctg
aaactggggactgtagacctttcacaggtttcctatttcgtgctcgatgaagccgaccgc
atgttggatatgggattttacgacgacattatgcaggtatataaacaactgcctcctacg
tgtcagactattatgttctccgccaccatgcctcccaaaatcagaacattagcaaaaaca
attctgaaaaaccccgaagaagttaaaatcgccatctcacgtccaccggaaacaatcatg
caaacggcttatatttgctacgatcctcaaaaactaaagatacttgaagatctgttccag
caaagccgtccgcagcgtgtcattattttctcttcttccaaaatgaaagtgaaagagctt
gcctctaccctgaaacggatgaagttcaatgtagctgccatgcactccgacctggaacag
tctcagcgcgaagaggtgatgaaagaatttaaaaacggacacatcgacatactggtcgct
accgacgttgtttcacgcggtatcgatatcaatgacatcaaactggtagtcaattatgat
atacctcacgatccggaagattacgtacaccgcattggtcgtactgcacgcggtaccggc
ggcgaaggattagctatcacatttatcagtatagaagaacaggcacagttcaaacgcatc
gaaaacttcctggaaaaagaggtttacaaaatccctatcgatccgaagtttggcgaaaca
cccttgtacgagcctgagaaatatggaaatatgcgtcgcggacgcggacgtccacgtaaa
gaaggtaacaacggtggaggaagaaatcagggaaaccgtccgggaggaaaacccaataac
ggaaaccgccgcggaagacctaaaaaagaatcctga
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