Parabacteroides faecis: NXY11_26775
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Entry
NXY11_26775 CDS
T08643
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfai
Parabacteroides faecis
Pathway
pfai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NXY11_26775 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfai03021
]
NXY11_26775 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfai03400
]
NXY11_26775 (rpoB)
Enzymes [BR:
pfai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NXY11_26775 (rpoB)
Transcription machinery [BR:
pfai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NXY11_26775 (rpoB)
DNA repair and recombination proteins [BR:
pfai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NXY11_26775 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7210
Motif
Other DBs
NCBI-ProteinID:
UVQ46668
LinkDB
All DBs
Position
6795459..6799271
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSTAENQRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYCIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
YLGPIPYMTERGTFVINGAERVVVSQLHRSPGVFFGQSTHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEVKVSKANLKKLIGRK
LAARVLKTWVEDFVDEDTGEVVSIERNDVIIDRESVLDSDSIEAILESGTQNVLLHREDQ
NLSDYAIIYNTLQKDPSNSEKEAVLYIYRQLRNAEPADEASAREVIQNLFFSEKRYDLGE
VGRYRINKKLNLTTSDDVKVLTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQ
LYNQFGIGLARMSRTVRERMNVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTN
PLAEITHKRRLSAFGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINDLGFISTPYRKVVNGQVDFSDESLQYYTAEEEEEMTIAQGNAPLDENGKFILERVKA
RFEADFPVVPPSEIDLMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTD
APIVGTGIEAQVARDSRTQIMAERDGEVVFVDATCIKIKYDRTEDEDFVSFEDAVKTYVI
PKWRKTNQSTTVDLRPICHRGQRVKAGDILTEGYSTQNGELALGRNVKVAYMPWKGYNYE
DAIVLNERMVREDFFTSVHVDEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRV
GARIEPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTAL
FSKAVKKRKSRLTDKAILPKLDEEYEMKMADLKNLLVEKLLTLTTGKVSQGVKDYMNTEV
IAKGAKFTRKALEDLDYNAVQVSKWTADADKNELIKQVILNYLKKYKELDAELRRKKFDL
TIGDELPTGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDI
CLNPLGVPSRMNLGQIFEAVLGWAGRTMGVKFATPIFDGASLDDLNEMTDKAGIPRYGKS
YLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAAHVLQEILTIKSDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHEL
RGLGLSFTLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacagctgaaaaccaaagagttaattttgcttcgattaagaatcagtttccg
tatccggactttctcgaagttcaattgaagtcattccaagactttcttcaacttgacaca
cctccagaaaagagaaagaaggaggggttgtataaggtatttgcagagaatttccccatt
gcagataccagaaacaactttgtgttggagttcttagattactatatagatccgccccgt
tattgcattgatgaatgtatagcgcgtggattaacctatagtgtgcctttaaaagcaaag
ttaaaactatattgtacagacccggatcatgaagattttgatactgtaatccaggatgta
tatttaggccctatcccctatatgacggagagaggcacttttgtgataaatggtgctgaa
cgtgttgttgtttcgcagttacaccgttctccgggtgtattctttggtcagagtacacat
gctaacggaacgaaattgtattcagcacgtatcattccgtttaaaggttcgtggatcgaa
tttgcaacagacattaataatgtgatgtatgcttatatcgaccgtaaaaagaaattacct
gtaactacccttttaagagctattggttttgaaagcgataaagatattcttgaaatcttt
aacctggctgaagaagtaaaagtttcgaaagctaatctgaagaaactgatcggtcgtaag
ctggctgcccgtgtattgaaaacctgggtagaagatttcgtggatgaagatactggcgaa
gttgtttctattgaacgtaatgacgttatcatcgaccgtgaatcggttttggatagcgac
agtattgaagctattctggaatctggaacacagaatgttttattacatcgtgaagaccag
aatctttcagattatgcaatcatctataatacgcttcagaaagacccgagtaactccgaa
aaagaggctgtattgtatatttaccgtcagttgcgtaatgcagaacctgcagatgaagca
agtgcccgtgaagttatacagaacctgttcttctctgaaaaacgttatgatttaggtgaa
gtaggccgttacagaatcaataaaaagttgaaccttaccaccagtgatgatgtcaaggtt
ttgactaaagaagatataatcgagatcatcaaatatctgattgagttgatcaactcgaaa
gcgattgtggatgatatcgaccacttgagtaaccgtcgtgtacgtaccgtaggtgaacaa
ttatacaaccaattcggtatcggtttggctcgtatgtcgcgtacagtacgcgaacgtatg
aacgttcgtgacaatgaagtatttactccgatcgatttgattaatgcgaagactatttct
tctgtcgttaactctttcttcgggacaaatgccttgtcacagtttatggaccagacaaac
ccgttggctgaaattactcacaaacgtcgtctgtctgcctttgggccgggtggtttgtca
agagaacgtgccggattcgaggttcgtgacgttcactatacacactatggccgtctttgt
ccgattgaaactcctgaaggaccgaatatcggtttgatctcttctttgtgtgtatatgca
aagatcaatgatctgggatttatttcgactccgtaccgtaaggttgtgaatggtcaggtt
gacttttctgacgagagtctgcagtattatacggcagaggaagaagaggaaatgactatt
gcacagggtaatgctccgctggatgaaaatggtaaatttattcttgaaagagtaaaggct
cgtttcgaagcagacttccctgttgtgccgccttctgaaatcgatctgatggacgtggct
cctcagcagatcgcttcaattgctgcatctctgattccgttcttggaacatgatgatgcg
aaccgtgcgttgatgggatctaacatgatgcgccaggcagttcctttgttgcgtacggat
gctccgatcgtaggtactggtatcgaggcacaggttgctcgcgattcacgtacacagatc
atggccgaacgtgacggtgaagttgtatttgtagatgcaacttgtatcaagattaaatat
gaccgtacagaagatgaagatttcgtaagcttcgaagatgcggttaagacatatgttatt
ccgaagtggcgtaagactaaccagagtactactgttgaccttcgtccgatctgccatcgg
ggtcagcgtgtaaaagcaggagatatccttactgaaggttattctacacagaatggagaa
cttgctttagggcgtaatgtgaaagtggcttatatgccatggaagggttacaattatgag
gatgctatcgtactgaacgaacgtatggttcgtgaagacttctttacctctgttcacgtg
gatgaatatatccttgaagttcgcgaaacaaaacgtggtatggaagaattaacgtctgat
attcctaacgtaagtgaagaagcgactaaggatttggatgaaagaggtattgttcgtgta
ggtgctcgtatcgaaccgggtgatatcctgatcggtaagattactccgaagggtgaatcc
gatccttctcctgaagaaaaattacttcgtgcaatcttcggtgataaagctggtgacgtg
aaggatgcttctttgaaagcaactccgtctcttcgtggtgttgttatcgatacggcttta
ttctctaaagcggttaagaaacgtaagtccagattgacagataaggctattcttccgaag
ttggatgaagaatacgaaatgaagatggccgacctgaaaaacctgctggtagagaaatta
ttgactcttaccactggtaaagtttctcagggtgttaaggactatatgaatactgaagtg
attgcaaagggtgctaagtttactcgcaaggctttggaagacttggattacaatgctgtt
caggttagtaaatggactgccgatgctgataagaacgaacttatcaagcaggtgatcctg
aactatctgaagaaatataaagaactggatgccgaactgagacgtaagaaattcgatctt
actatcggtgatgaactgccgacaggtatcgttcagatggcgaaggtttatattgctaag
aaacgtaagatccaggtaggtgataagatggccggtcgtcatggtaacaaaggtattgtt
tccaagatcgttcgtcaggaagatatgccgttcctggaagacggaactccggttgatatc
tgcttgaacccgctgggtgtgccttctcgtatgaaccttggacagatatttgaagctgta
ttaggttgggctggtagaacaatgggtgttaagtttgcaactccgattttcgatggtgca
tctttggatgacctgaacgaaatgactgacaaggcgggtattccacggtacggtaaatct
tatctgtatgatggtggtacaggtgaacgtttcgaccagccggcaacagttggtgttact
tacttcctgaaactgggccacatggttgatgataagatgcatgctcgttcaatcggtccg
tactctttgattactcaacagcctctgggtggtaaagcacagtttggtggtcagcgtttc
ggagaaatggaagtttgggcactggaagctttcggtgcagcacatgttcttcaggaaatt
cttacaattaagtctgatgacgttgtaggacgttctaaagcttacgaagcaattgtaaaa
ggtgatccgatgccacaaccgggtattccggaatctctgaatgtattgctccatgagctg
agaggtttaggtttaagctttactctggattaa
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