Pseudomonas fakonensis: KSS94_02230
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Entry
KSS94_02230 CDS
T07698
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSS94_02230 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfak03021
]
KSS94_02230 (rpoD)
Transcription machinery [BR:
pfak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSS94_02230 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QXH51985
UniProt:
A0ABX8N818
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All DBs
Position
complement(521256..523106)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTAEGGRLSDVLSGYIDPDDNIAAPTEE
VPVPGAKAPAAKEESDDDEEESEGSDDEEETESGPDPVVAAQRFGAVADQLQATLKVVKK
NGRSAKDSIAALQALADLFMPIKLVPKQFDVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRLFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAE
IKEVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgccctgctgttggcggaagccgacaccgacgaagccgcagccgaa
gaagctgccgccgcgttggcagcagtcgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgtgaagtcatgggcgccatcgcccacttcccg
ggcaccgtcgattacatcctcggcgaatacgaccgcgttaccgccgaaggcggccgcctg
tccgacgtgctgagcggctacatcgaccccgatgacaacattgccgcgccgaccgaagaa
gtgccggtaccgggtgccaaagccccggcagccaaggaagaatcggacgacgacgaagaa
gaaagcgaaggcagtgacgacgaggaagagaccgaaagcggtcccgaccccgtggttgca
gcccagcgcttcggcgccgttgccgatcagctccaggccaccctcaaggtcgtgaagaaa
aacggtcgcagcgccaaggacagcatcgctgccctgcaggccctggccgacctgttcatg
ccgatcaagctggtacccaagcagttcgacgtactggtcgagcgcgtgcgcgacgccctg
aaccgcctgcgccagcaagagcgtgcaatcatgcagctgtgcgtgcgtgatgcgcgcatg
ccgcgtgccgacttcctgcgcctgttcccgagcaacgagaccgaccagacctggtccggt
gacctggccaagcgcaacaccaagtgggctgccgccctgggtgagaaagacgccgccatt
gtcgcctgccagcagaaactgatcgacctcgagaccgaaaccggcctgaccgtcgccgaa
atcaaggaagtcaaccgccgcatgtccattggcgaggcgaaagcccgtcgcgccaagaag
gaaatggtcgaggccaacctgcgtctggtgatttctattgcgaagaagtacaccaaccgt
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgttcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggccgtgaa
ccgaccccggaagagctgggtgagcgcatggaaatgcctgaggacaagatccgtaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagattcg
cacctgggcgacttcatcgaggactccaccatgcagtccccgatcgacgtggccacggtc
gaaagcctcaaggaagccacccgcgacgtgctctcgggcctgaccgcacgcgaagccaag
gtgctgcgcatgcgtttcggtatcgacatgaacaccgaccacaccctcgaagaagtcggc
aagcagtttgacgtgacccgtgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ctgcgccacccgacgcgaagcgagcacctgcgctccttcctcgacgagtga
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