Pseudomonas fakonensis: KSS94_06435
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Entry
KSS94_06435 CDS
T07698
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfak
Pseudomonas fakonensis
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfak03009
]
KSS94_06435 (rlmD)
Enzymes [BR:
pfak01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KSS94_06435 (rlmD)
Ribosome biogenesis [BR:
pfak03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KSS94_06435 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
Methyltr_RsmB-F
RrnaAD
Methyltransf_37
PCMT
Methyltransf_15
Methyltransf_ANTKMT
TPMT
Methyltransf_4
DREV
Ubie_methyltran
PrmA
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
QXH52763
UniProt:
A0ABX8N8S9
LinkDB
All DBs
Position
1409645..1411003
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AA seq
452 aa
AA seq
DB search
MSRKKSNSGLRFQPAGGNRTAQVPVGKKQRLQIERLSGDGRGIAFIEGRTWFVSGALGGE
EVEARVLGARGKVVEARLERVFQASPERREAPCKHYDRCGGCNLQHLPHEGQLALKQRLL
AEQLQRVAGLQPEEWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDD
CAVLVQPLQSILRHLPTVLRSLGKPQALGHVELFSGTAEAVLVRHVAPLPDDDLARLKAF
CEQANAQLWLQGEGQPAPVDAAAKLGFALEPWGLELAWRPGDFVQVNAQVNSLMIQQALS
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAADNARNNDVHNARFFQ
ADLSQPLAGAGWVAEGFSAVLLDPPRDGAFEVVQGIHGLGAKRLVYVSCNPATLARDAQV
LAGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaagaaaagcaacagcggcctgcgcttccagccagccggcggcaaccgtacc
gcacaagtgcccgtgggcaagaagcaacgcctgcagatcgagcgcctgagcggtgatggc
cgcggcatcgccttcattgaaggccgcacctggttcgtcagcggcgcgctgggcggtgaa
gaggtcgaggcgcgggtactcggcgcccgtggcaaggtggtcgaggcgcgcctggagcgc
gtgttccaggccagccccgaacgccgcgaggccccctgcaagcactatgaccgctgcggc
ggctgcaacctgcagcacctgccccacgaaggccagctggcactcaagcagcggttgctg
gccgagcaactgcaacgggtggccggcctgcagccggaagaatgggccgccccgctgagc
gggcctgagttcggctaccgccgccgcgcgcgggtagccgtgcgctgggatgtgaaggcc
cgccagctggaagtcggttttcgtgccgaggccagccaggacatcatcgccattgacgac
tgcgcagtgctggtacaacccttgcagtcgattctgcgccacttgccgactgtgctgcgc
agcctgggcaaaccccaggcgctgggccatgtagagctgttcagtggcaccgccgaagcc
gtgctggtgcgccatgtggcgccgctgccggacgacgacctggcgcgcctgaaggcattc
tgcgaacaggccaacgcgcagctgtggctgcagggcgagggccagccggcgccggtggat
gccgccgccaagctgggctttgcgctcgagccctgggggctggagttggcctggcggccg
ggcgatttcgtccaggtcaatgcccaggtcaacagcctgatgatccagcaggcgttgagc
tggctggcgccacaggcagatgagcgggtgctggacctgttctgcggcttgggcaacttc
gccctgccgctggcccgccaggcccgcgaagtagtggcggtggaaggcgtgcaggccatg
gtcgagcgcgcggcggacaatgcccggaacaacgatgtgcataacgcacggttttttcag
gccgatttatcgcagcctttggcgggcgccggatgggtcgccgaaggcttttctgcggta
ctcttggacccaccacgcgacggggcctttgaagtggtgcaaggcatccacgggctcggc
gcaaaacggctggtctacgtatcgtgcaacccggccacgctggcgcgagacgcgcaggtg
ctggcagggcaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcgcatgtcgaggccatggcgttattcgaagcaggctga
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