Pseudomonas fakonensis: KSS94_07515
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Entry
KSS94_07515 CDS
T07698
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS94_07515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfak03019
]
KSS94_07515
03009 Ribosome biogenesis [BR:
pfak03009
]
KSS94_07515
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS94_07515
Messenger RNA biogenesis [BR:
pfak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS94_07515
Ribosome biogenesis [BR:
pfak03009
]
Prokaryotic type
rRNA helicases
KSS94_07515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QXH52968
LinkDB
All DBs
Position
1649811..1651496
Genome browser
AA seq
561 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPGPQAVLDARIKKLTKSLAPLVAESEASHGELFDRLTADLGCSARAL
ASALLRKATNGQALDLASVEREQPLVPTYTPRERTGERAERGERSERSSGDRERRAPMPL
AEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLL
TKLKDTRVAGKQLKLRRYRED
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgatctcaatccgaatatcgttgctgct
gttctggccaccggctacgaagagccatcggctattcagcatcagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagctaccgctttcgaaacctacgccaagcag
atgccgggcgttaacgtggtggccgtgtacggtggtgccccgatgggcccacagctgcgc
gccatccgcaacggcgcacaaatcgtcgtcgccaccccgggccgcctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtccaccgtgcagtacctggtgctggacgaagcagacgaa
atgctcaagctcggtttcatggatgacctcgaagtgatcttcgacgccatcccggcctcg
cgccagaccgtgctgttctccgctaccctgccgtcgtcgatccgttcgatcgccgagcgt
cacctgcgcgagcccaagcacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggcccacctgatggtccacgccgaccagaagatcccggccgtgctgcgcctgctg
gaagtcgaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggcctcggccctggaagccaaaggctacaaggctgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggacggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggcctggacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgatggccgtgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaagttgccgaagcccgcctgcctggcccacaagccgtgctg
gatgcgcgcatcaagaagctgaccaagagcctggcgccgctggtggccgagtccgaggcc
agccacggcgagctgttcgaccgcctgaccgccgaccttggctgcagcgcccgcgccctg
gcgtcggccctgctgcgcaaggccaccaatggccaggcgctggacctggccagcgttgag
cgcgagcagccgctggtgccaacctacaccccgcgtgagcgcaccggtgagcgtgccgaa
cgtggtgagcgtagcgagcgcagcagcggtgaccgtgagcgccgtgcgccgatgccgctg
gccgaaggccgcgtgcgttgccgtaccgccctgggtgcccgtgacggcatcgctgccaag
aacctgctgggggcgatcctcaacgaaggtggcctggcccgtgacgccattggtcgtatt
caggtgcgcgacagcttcagcctgatcgagctgccggaagatggccttgagcgtctgctg
accaagctcaaggacacccgcgtggccggcaagcagctgaagctgcgtcgctaccgcgag
gattga
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