Pseudomonas fakonensis: KSS94_11195
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Entry
KSS94_11195 CDS
T07698
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfak
Pseudomonas fakonensis
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfak03032
]
KSS94_11195
03400 DNA repair and recombination proteins [BR:
pfak03400
]
KSS94_11195
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS94_11195
DNA replication proteins [BR:
pfak03032
]
Prokaryotic type
DNA Topoisomerases
KSS94_11195
DNA repair and recombination proteins [BR:
pfak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS94_11195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QXH53640
LinkDB
All DBs
Position
complement(2464830..2465840)
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AA seq
336 aa
AA seq
DB search
MSDCPLPASLHYVDDTQPGLSRRRWRDRFHYFDTEGARIRDADTLARIAALVIPPAYTEV
WICADPQGHLQATGRDARGRKQYRYHAQWRELRDGHKYGRMLAFAQALPGLRRQLEVHLA
RPGLDREKVMALVISLLDSTLIRIGNRRYLRDNRSYGLTTLNNRHVKVQGSTIRFQFRGK
RGVEHDVTLRDRRLAALLKRCMELPGQALFQYLDADGQRHSIGSTEVNQFLQQLTGADFT
AKDYRTWAGSSLALSLLRPLAWEPDSEARRQAAAIVRQVAARLGNTPAVCRRCYIHPAVL
EHYHLGRLGLLPRVRRRKGLEVDEVALLRFLQTLAP
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactgcccgctgcctgccagcctgcattatgtcgacgacacccagcccggcctc
agccgccgccgctggcgtgaccgttttcactatttcgataccgaaggcgcgcgcatccgc
gacgccgataccctggcgcgcatcgccgcgctggtgatcccgccggcctacaccgaggtg
tggatctgcgctgacccgcaaggccacctgcaggccaccggccgcgatgcccgcgggcgc
aagcagtaccgctaccatgcgcagtggcgcgaactgcgcgatggccacaagtacgggcgc
atgttggccttcgcccaagcgctgccgggcctgcgcaggcaactggaggtacacctggcc
cgcccggggctggaccgggaaaaagtcatggcgctggtgatcagcctgctcgacagcacg
ctgatccgcatcggcaaccgccgctacctgcgcgacaaccgctcatacggcctgaccacc
ctgaacaaccgccacgtcaaggtgcagggcagtaccatccgcttccagttccgcggcaag
cgcggtgtggaacacgacgtcaccctgcgcgaccggcgcctggcggcgctgctcaagcgc
tgcatggagctgcccggccaggcgctgttccagtacctggatgccgacggccagcgccac
agcatcggctccaccgaggtcaaccagttcctccaacaactgaccggtgccgatttcacc
gccaaggactaccgcacctgggccggcagcagcctggcactgagcctgctacggccactg
gcctgggagccggacagcgaggcccggcgccaggccgcggcaatcgtgcgccaggtggcc
gcgcggctgggcaatacaccggccgtgtgccggcgctgctacatccaccccgccgtgctg
gagcactaccacctcgggcgcctgggcctgctgccgcgcgtccgtcgacgcaagggcctg
gaggtcgacgaagtggcactgcttcgattcttacaaacactggcgccgtaa
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