Pseudomonas fakonensis: KSS94_19885
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Entry
KSS94_19885 CDS
T07698
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pfak
Pseudomonas fakonensis
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfak03019
]
KSS94_19885 (hrpA)
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSS94_19885 (hrpA)
Messenger RNA biogenesis [BR:
pfak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSS94_19885 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
T2SSE
ResIII
NACHT
AAA_30
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QXH50190
LinkDB
All DBs
Position
complement(4530570..4534475)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLNNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASFAQVTARQQS
VPNIRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPELKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVDTWYRPLTREQDEEGNQVEDDISVDQAILATLDEIAHHERSQGKGPGDVLV
FLPGEREIRDAADMLRKAQLRHTEILPLYARLTPAEQQKIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRMGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAHRQ
LSLICRELQLAVNKEPCDYLRMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGIG
RKRPQWVMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPVTSRELFIREALVGGEIQSRARCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPEEIHQSATFDSWYRTTSQKDANLLIMREEDVLAREAS
EVTAAQYPDHLQVGELRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALSRMSFAQGALPQALGQELLRMTGARVSDEAWA
EAASLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAMPRSEKADQPVQAK
AFTEVAQTAQQKIAGLSMTVYPALVEENGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRSKLPGLTELGLLYRELGRVDALVEDILLASLDSCVLEGEDPLPRDGAGLASLAE
RKRGDWAEHAERLARLTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLANLVYPGFVR
ETPGTWLKELPRYLKAVELRLEKLGSQVQKDRVWSAELNNCWAQYKARADKHAQEGKRDE
QLALYRWLLEEYRVSLFAQQLGTKVAVSDKRLSKQWSQVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccaactgctgaacaacctcgaccacgccatgattgccgac
cgccatcgcctgcgccggcaactgcacgaactgcgcaagcgcccggacgaggccaagctt
gcgcagtgggtggaaaaggtccaggcctccttcgcccaggtcaccgcgcgccagcagagc
gtgccgaacatccgttacgacgacagcctgccgatcgcggccaagcgtgacgagatcaaa
aaagccctggccgaacaccaggtgctggtgatcgccggcgaaaccggctcgggcaagacc
acccagttgccgaagatctgcctggaacttggtcgcggcagccatggcctgatcgctcac
acgcaaccgcggcgtatcgctgcgcgcagcgtggcggcgcgggttgccgaagagctgggc
acgccgctgggggcactggtgggctaccaggtgcgcttcgaagaccagagcgattcgaac
accctggtcaagctgatgaccgatggcatcctgctggccgaaacccagcacgaccgcttt
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgat
tttctgctcggctacctcaagaccctgctgcaccggcgccccgagctcaagctgatcatc
acctcggcgaccatcgaccttgagcgcttctccaagcacttcgatggcgcgccgatcatc
gaggtgtcgggccgcacctacccggtggacacctggtaccgcccgctgacccgcgagcag
gacgaggagggcaaccaggtcgaggatgatatctccgtcgaccaggcgatcctcgccacc
ctcgacgaaatcgcccaccacgagcgcagccagggcaagggcccaggcgatgtgctggtg
ttcctgcctggcgagcgagagatccgcgacgcagccgacatgctgcgcaaggcgcagttg
cgccacaccgaaatcttgccgctgtacgcgcgcctgaccccggccgagcagcagaagatc
ttccagtcccacagtggccggcgggtggtattggcgaccaacgtcgccgagacctcgctg
accgtaccgggcatccgctacgtgatcgacagcggtaccgcgcgcatcagccgctacagc
taccgcgccaaggtgcagcgcctgcccatcgaggcggtgtcgcaggccagcgccaaccag
cgtaagggccgttgcggccgggtcgagccgggcatctgcatccgcctgtacagcgaagac
gacttcaacggccgcccggcgttcaccgacccggagatcctgcgtaccaacctggcggcg
gtgatcctgcagatgctgcacctgcgcctgggcgccatcgatgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgacggcttcaacctgctgcaggagctgtcggcggtc
aaccgcgagaaccagctcaccccgctgggtcgccagctggcgcgcctgccgatcgacccg
cgcatgggccgcatgctgcttgaaggcgcacgccagggcagcctgcaggaagtgctgatc
gtcgccagtgccctgtcggtgcaagacccccgcgagcgcccgccggagcgccagcaggcc
gccgaccaggcccatgcgcagtggaaggacgtcgactcggacttcgccgccctggtgaac
ctgtggcgtggcttcgaggagcagcgccaggcgctgactgcaagccccttgcgcaactgg
tgccgcaagaacttcctcaactacctgcgcctgcgcgagtggcgcgatgcgcaccgccag
ctgtcgctgatctgccgcgagctgcaactggcggtcaataaagagccgtgcgattacctg
cgcatgcacaaggccatcctcagcggcctgctcagccagatcggccagaagaccgaagaa
ggcgactaccagggcgcgcgccagcgcaggttctgggtgcacccctcgtcgggcatcggc
cgcaagcgcccgcagtgggtgatgaccgcagaactggtagaaaccaccaagctgtacgcg
cgcatggtggcgaaaatcgagccggactggatcgagccgctggccggccacctgatcaag
aagaatcacttcgagccgcactgggagaagaagcgcggccaggtggtggcttacgagcag
atcaccctgtacgggctgatcctggtaggccgccggccggtgcactatggcccgatcgac
ccggtcacctcccgcgagctgttcatccgcgaggctctggtggggggtgaaatccagtcc
cgggccaggtgcctggcagccaacaaacgcctgcttgaacagctcgacgagctggaagcc
aaggcgcgtcggcgcgatatcctggccgacgaagaaaccctgtacgccttctacgaggcg
cgcctgcccgaagagatccaccagagcgcgaccttcgacagctggtaccgcaccaccagc
cagaaggacgccaacctgctgatcatgcgcgaagaggacgtgctggcccgcgaggccagc
gaggtcaccgccgcgcagtaccccgaccacctgcaggtcggcgagctgcgcctgtcgctg
agctaccacttcgagcccaaccacccccgcgacggcgtgaccgtgcgggtgccagcgccg
ctgctgcccaacctgccgggcgagcgcctggaatggctggtaccggggctgctggaggcc
aagtgcatcgccttggtgcgcaacctgcccaaggcgctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcgctgtcgcgcatgagtttcgcccagggtgcgctgccccag
gccctgggccaggagctgctgcgcatgaccggcgcgcgggtgtccgacgaggcctgggcc
gaagccgcttcgctggtcgaaggccacctgcggatgaacatcgaggtggtcgatggccag
ggcaagttccttggtgaaggccgcgacctggccgagctgaccgcacgcttcgctgccgcg
agccaggcggcgctggcgatgccgcgcagcgaaaaggccgaccagccggtgcaggccaag
gccttcaccgaggtggcgcagaccgcccagcagaagatcgccgggctgtcgatgaccgtc
tacccggcactggtcgaagaaaacggcacggtgcgcgaggggcggttctccacccaggcc
gaagccgagttccagcaccgccgcgccctgcagcgcctgctgctgcaacaactggcagag
ccggccaagttcctgcgcagcaagctgccggggctgaccgagctgggcttgctgtaccgc
gagctgggccgggtcgatgcgttggtcgaagacattctgctggccagcctggacagctgc
gtgctggaaggggaggacccgctgccgcgcgacggcgccggcctggcatcgctggccgag
cgcaagcgcggcgactgggccgagcatgccgagcgcctggcccgccttacgcttgaagtg
ctcaagctgtggcatggcctgcaaaagcgcttcaagggcaagatcgacctcagccaggcg
gtggcgctgaacgatatcaagcaacaactggccaacctggtgtacccgggcttcgtgcgc
gaaaccccgggtacctggttaaaggagctgccgcgctacctcaaggcggtggaactgcgc
ctggagaaacttggctcgcaagtgcagaaggaccgggtgtggagcgccgagctgaacaac
tgctgggcgcaatacaaggcccgcgccgacaagcatgcccaggagggcaagcgtgacgag
caactggccctgtaccgctggctgctggaggaataccgggtgtcgttgttcgcccagcag
ttgggcaccaaggtggcggtttccgacaaacgcctgagcaagcagtggagtcaggtggaa
gcctaa
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