Pseudomonas fakonensis: KSS94_20220
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Entry
KSS94_20220 CDS
T07698
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfak
Pseudomonas fakonensis
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfak03016
]
KSS94_20220 (rnd)
Enzymes [BR:
pfak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KSS94_20220 (rnd)
Transfer RNA biogenesis [BR:
pfak03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KSS94_20220 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QXH50254
LinkDB
All DBs
Position
complement(4601481..4602614)
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AA seq
377 aa
AA seq
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MAIEIHWIRDDQTLAEHCQAWRELPYVALDTEFMRVDTFYPKAGLIQIGDGKRAFLIDPL
LIRNWQPLAALLEDSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNIGFSMGY
SRLVQEVLGLELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTALRPRLSDDKYAWV
LEDGAELVAAMRREVDPQTLYREVKLAWKLSRQQLAVLRELCAWREREARNRDVPRNRIL
KEHSLWPMAKSQPDNLSALAKIDEMHPRTIRQDGQFLIELIKRAGSQPAEQWPQALPEPL
PIEAAGILKRLRAIGQAEGERLQIAPELMLRKKALEALLKSGYPDGPYQLPDALRGWRRE
RMGQALLDDLAGAGDKP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaattcactggatccgtgacgaccagaccctggccgaacactgccaagcc
tggcgcgaactgccctatgtagcactcgacaccgaattcatgcgggtcgacaccttctac
cccaaggcgggcctgatccagatcggcgacggcaagcgcgccttcctcatcgacccgctg
ttgatccgcaactggcaacccctggccgcgctgctcgaagacagcggcgtggtcaaggtg
ctgcacgcctgcagcgaagacctcgaagtgctgctgcgcctgaccggcaagctgccgcag
ccgctgttcgacacccaactggccgccggctacctgaacatcggcttctccatgggctac
tcgcgcctggtgcaagaggtgctggggctcgaactgcccaagggcgaaacccgctccgac
tggctgcagcgcccgctgtccgagacccaggtcagctacgccgccgaagatgccgtgcac
ctggccgagctgttcaccgccttgcgcccgcgcctgagcgatgacaagtatgcctgggtg
ctggaggacggcgcagagctggtggctgcgatgcgccgcgaggtcgacccgcagacgctg
taccgcgaggtgaagctggcctggaagctgtcgcgccaacaactggctgtattgcgcgag
ctgtgtgcctggcgcgagcgtgaagcgcgcaaccgcgacgtgccacgcaaccgtattctg
aaggaacactcgctgtggccgatggccaagtcccagcccgacaacctgtcggcactggca
aaaatcgacgagatgcacccgcgcaccatccgccaggacggccagttcctcatcgagctg
atcaagcgtgctggcagccagcccgccgagcaatggccgcaggctttgcccgagccgctg
ccgatcgaagccgccggcattctcaagcgcctgcgtgccattggccaggccgaaggcgag
cgcctgcagattgccccggagcttatgctgcgcaagaaagccctcgaagcgctgcttaaa
agcggctaccccgacggcccctatcaactgcccgatgcgttgcgcggctggcgccgtgag
cgcatgggccaggccctgctggatgatttggcgggtgccggagacaagccatga
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