Pseudomonas fakonensis: KSS94_24215
Help
Entry
KSS94_24215 CDS
T07698
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS94_24215 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfak03019
]
KSS94_24215 (rnr)
03016 Transfer RNA biogenesis [BR:
pfak03016
]
KSS94_24215 (rnr)
Enzymes [BR:
pfak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KSS94_24215 (rnr)
Messenger RNA biogenesis [BR:
pfak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSS94_24215 (rnr)
Transfer RNA biogenesis [BR:
pfak03016
]
Prokaryotic type
tRNA degradation factors
KSS94_24215 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXH51006
UniProt:
A0ABX8N3V6
LinkDB
All DBs
Position
complement(5489316..5491898)
Genome browser
AA seq
860 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREQLAEEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPAQMR
LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVSIKITHWPTPRFQPQGDVIEVIGNYMAPGMEIDIALRSYDIPHV
WPKDVIKEARKFRSEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKAGQMVDYQFYEGLIHSHARLTYNKVSSMLEHARTREGKALREEYSEVLPD
LKHLYALYKALVAARHTRGAIDFETQETRIIFGEDRKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHNVPSLYRVHDGPPPERLEKLRAFLGELGLTLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKMDTPHVKRAGALSIPKARIYPYDENSLEQMGEQCSMTERRADEATRDVVNWLKCEYM
RDRVGETFPGVITAVTGFGLFIELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERSGRS
FRLGDTVEVKVMRVDLEQRKIDFEMSEATVNAPVGRKPRAAGASEAAPAPAQAPVQEAKI
SPKPRSRKSETADAYFPKDAVQRNAEVRKSREMKKALMGEARSSHAGSKADKGSKPSGKP
TKHRKGPPKSGAPRKGKNKS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgataat
cccatccccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgagccggcagcc
cgcgaacagctggccgaagaattcggtctttacgaagaagaccagatcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgatggtcagcttatctatacccggcgcggcacctat
gccccggtagacaagctcgacctgatctgcggccgcgtttccggtcaccgtgacggcttc
ggcttcctgatccccgacgacggcagtgaagacctgttcttgagccccgcgcagatgcgc
ctggtgttcgacggcgaccgtggcctggcccgggtgtccggcgtcgaccgccgtggccgg
cgcgaaggcgtgctggtcgaagtcatctcccgcgcccacgaaagcgtggtcggccgatac
ttcgaagaaggcggcatcggctacgtgaccccggacaacccgaagatccagcaggaagtg
ctggtgactgccgggcgtaacggcggtgccaagatcggccagttcgtctcgatcaagatc
acccactggccgaccccgcgcttccagccgcagggtgatgtgatcgaagtgatcggcaac
tacatggcgccgggcatggagatcgacatcgccctgcgcagctatgacattccgcacgtc
tggccgaaggacgtgatcaaggaagcgcgcaagttccgttccgaagtcgaagagaaggac
aaggaaaagcgcatcgacctgcgccacctgcccttcgtcaccatcgacggcgaggacgcc
cgcgacttcgacgacgccgtctactgcgaaccgctgggcaagctgcgcctgttctccggc
ggctggcgcctgtacgtggccatcgccgacgtgtccagctacgtgcgcctgggttcggcc
ctggacgtcgaggcccagcagcgcggcaactcggtgtacttccccgagcgcgtggtgccg
atgctccccgaggagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgcctg
gccatggtctgcgagatgaccatcaacaaagccggccagatggtcgactatcagttctac
gaaggcctgatccactcccacgcgcgcctgacctacaacaaggtcagcagcatgctggaa
cacgcccgtacccgcgaaggcaaggccctgcgcgaggagtacagcgaggtgctgccggat
ctcaagcacctgtacgccctgtacaaggcgctggtggcggcccgtcacacccgtggcgcg
atcgacttcgaaacccaggaaacccggatcatcttcggtgaagaccgcaaaatcgccgaa
attcgtccgacggtgcgcaacgacgcccacaagctgatcgaggaatgcatgctggcggcc
aacgtcgccacggccgagttcctgcaaaagcacaacgtgccgtcgctgtaccgcgtgcac
gacggcccgccgccggagcgcctggaaaaactgcgcgccttcctgggcgagctgggcctg
accctgcacaagggcaaggacccgtcgccgaaggattaccaggccctgctggcgagcatt
gccgggcggccggacttccacctgatccagactgtcatgctgcgctcgctcagccaggcg
gtgtacagcaccgagaacaatggccacttcggcctgaactacgaggcgtacacccacttc
acctcgccgatccgtcgctaccccgacctgctggtgcaccgcgccattcgcagcgtgatc
cgttcgaagatggacaccccgcacgtcaagcgtgccggcgccctgagcatccccaaggcg
cgcatctacccgtacgacgagaacagcctggagcagatgggcgagcagtgctcgatgacc
gagcggcgcgccgacgaggccacccgcgatgtggtcaactggctcaagtgcgaatacatg
cgtgaccgcgtgggcgaaaccttccccggcgtgatcaccgcagtgaccggttttggcctg
ttcatcgagctgaccgacatctacgtcgaaggcctggtgcacgtcagtgccctgccgggc
gactactaccacttcgacccggtgcaccaccgcctgtcgggtgagcgcagtgggcgcagc
ttccgcctgggcgacacggtcgaggtcaaggtcatgcgcgtcgacctcgaacagcgcaag
atcgacttcgagatgtccgaagccacggtcaacgccccagttggccgcaagccgcgtgct
gccggtgccagcgaagcggcgccagcaccagcccaggctccggtgcaggaagcgaaaatt
tcgcccaagccgcgcagccgcaagagcgaaaccgctgatgcgtacttccccaaggacgcc
gtgcagcgcaacgccgaggtgcgcaagagccgcgaaatgaaaaaggcgctgatgggtgag
gcgcgctccagccatgcaggcagcaaggcggacaagggcagcaagccgtccggcaagccg
accaagcatcgcaaggggccgccgaagtccggcgcgccacgtaaaggcaagaacaagtca
tga
DBGET
integrated database retrieval system
