Pseudomonas fakonensis: KSS94_24755
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Entry
KSS94_24755 CDS
T07698
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS94_24755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfak03019
]
KSS94_24755
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS94_24755
Messenger RNA biogenesis [BR:
pfak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS94_24755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXH51110
LinkDB
All DBs
Position
5613358..5615265
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AA seq
635 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSKVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITMGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQRIPDGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGSKDGSGGR
KDKGKDKGKSKPAAEKPADKEKSGDNKQQQGQQRKPRDKKPRQQQAAQGQSAIPKPAANR
DPEEFLDDDVDNFGNRADYVSPYQNAKNGRNRRPGGNGGNGGQGQAQGQRSGGGQGQGQG
RGNGGQQRQGSGEKRARNGGGSNGGGARRDNNAGRNRRDDTARQEPAVRNPRDSQPAPVI
IRKESKLDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggctattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagacaggtactggtaagaccggcggtttcgcactgccgattctc
gagcgcctgttccccggcggccaccctgacaaatcgcagcgccacggcccgcgccaaccc
cgcgtgctggtgctcacccccacccgcgagctggccgcccaggtgcacgacagcttcaag
gtttacgcccgcgacctgaacttcatcagcgcctgcattttcggcggtgttggcatgaac
ccgcaggtgcaggccatggccaagggtgtcgacgtgctggtcgcctgcccgggccgcctg
ctcgacctcgccggccaaggcagcgtcgacctgtccaaggtcgagatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtgaagaaagtcctggcccgc
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaagacatcaccgac
ctcgccgacaagctgctgcacaaccccgagcgcatcgaggtcacgccgccgaacaccacc
gtcgagcgtatcgagcagcgcgtgttccgcctgccggccagccacaagcgcgcactgctg
gcgcacctgatcaccatgggtgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctcgaaaaacacggcctgaccgctgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacagcgtg
cgcgtgctggtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtgcaccgcatcggccgtacc
ggccgtgccggccgctcgggcgaggccatctcgctggtggctccggacgaagaaaagctg
ctcaagagcatcgagcgggtcaccaagcagcgcatccctgatggcgacctgatgggcttt
gacgcatcgcaagtcgaggcagaaaagccagaagtgcgcgagcgcccgcagaacaacggc
cgtggcggtcgcaaccagcaggcccgcggcgaaggcagcaaagacggcagcggcggtcgc
aaggacaagggcaaggacaaaggcaagagcaagcctgcggccgaaaagcctgccgacaag
gagaagtccggcgacaacaagcagcagcaaggccagcagcgcaagccgcgtgacaagaag
ccgcgccagcagcaggccgcacagggccagagtgccattccaaagcctgcagccaaccgt
gacccggaagagttcctcgacgacgacgtggataacttcggtaaccgcgccgactacgtc
agcccctaccagaatgccaagaacggccgtaatcgccgcccgggcggtaatggtggcaat
ggcggccagggccaggcccaaggccaacgcagcggtggtggccagggtcaaggccagggc
cgtggcaacggcggccagcagcgtcaggggtccggcgagaaacgcgcccgcaatggcggt
ggcagcaacggtggcggcgcgcgccgcgacaacaacgctggccgcaatcgccgtgacgac
accgcccgccaggagcctgccgtgcgcaacccgcgcgactcgcagccggcaccggtgatc
atccgcaaggaatccaagctcgaccgttacccgacgcccgagcaactggacgacctgcca
agccgcccacgcggtgaacgcccggccctgctgacccgcaagggctaa
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